# HG changeset patch
# User davidvanzessen
# Date 1386000114 18000
# Node ID b80b296f06352787f528b25e4a6189eabfb9eecd
# Parent  39ff573fed647c36f72f3c7730351be81efe29a8
Uploaded

diff -r 39ff573fed64 -r b80b296f0635 igblastmerge.xml
--- a/igblastmerge.xml	Mon Dec 02 11:01:49 2013 -0500
+++ b/igblastmerge.xml	Mon Dec 02 11:01:54 2013 -0500
@@ -1,20 +1,22 @@
 <tool id="igblastmerge" name="IgBlastMerge" version="1.0">
-	<description>Converting one or more "igBLASTreport parser" outputs for "VDJ Blast plot"</description>
+	<description>Multisample</description>
 	<command interpreter="python">
-		igblastmerge.py 
-		--input 
-		#for $i, $f in enumerate($files)
-			${f.file}
-		#end for
-		--id
-		#for $i, $f in enumerate($files)
-			$(f.id)
+		igblastmergems.py 
+		--input
+		#for $i, $f in enumerate($patients)
+            $f.id
+            #for $j, $g in enumerate($f.samples)
+            	${g.sample}
+            #end for
+
 		#end for
 		--output $out_file
 	</command>
 	<inputs>
-		<repeat name="files" title="File" min="1" default="1">
-			<param name="file" format="tabular" type="data" label="Data to Process" />
+		<repeat name="patients" title="Patients" min="1" default="1">
+            <repeat name="samples" title="Sample" min="1" default="1">
+                <param name="sample" format="tabular" type="data" label="Sample to Process" />
+            </repeat>
 			<param name="id" type="text" label="ID" />
 		</repeat>
 	</inputs>