Mercurial > repos > davidvanzessen > extract_duplicates
comparison extract_duplicates.xml @ 2:1f1640608245 draft default tip
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| author | davidvanzessen |
|---|---|
| date | Tue, 01 Sep 2015 08:34:27 -0400 |
| parents | 02cf2dd19564 |
| children |
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| 1:a3c4e3e62e10 | 2:1f1640608245 |
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| 1 <tool id="extract_duplicates" name="Extract Duplicates" version="1.1.0"> | 1 <tool id="extract_duplicates" name="Extract Duplicates" version="1.1.0"> |
| 2 <description>to a new dataset</description> | 2 <description>to a new dataset</description> |
| 3 <command interpreter="bash"> | 3 <command interpreter="bash"> |
| 4 extract_duplicates.sh $input $column $header $out_file | 4 extract_duplicates.sh $input $column $header "$regex_filter" $out_file |
| 5 </command> | 5 </command> |
| 6 <inputs> | 6 <inputs> |
| 7 <param format="tabular" name="input" type="data" label="Input"/> | 7 <param format="tabular" name="input" type="data" label="Input"/> |
| 8 <param name="column" label="on column" type="data_column" data_ref="input" accept_default="true" /> | 8 <param name="column" label="on column" type="data_column" data_ref="input" accept_default="true" /> |
| 9 <param name="regex_filter" type="text" label="Filter to sanitize the column" value="\\(.*" size='70'/> | |
| 9 <param name="header" type="boolean" checked="False" truevalue="yes" falsevalue="no" label="Input file has a header?" help="if checked, the first line of the input will be treated as a header"/> | 10 <param name="header" type="boolean" checked="False" truevalue="yes" falsevalue="no" label="Input file has a header?" help="if checked, the first line of the input will be treated as a header"/> |
| 10 </inputs> | 11 </inputs> |
| 11 <outputs> | 12 <outputs> |
| 12 <data format="input" name="out_file" metadata_source="input"/> | 13 <data format="input" name="out_file" metadata_source="input"/> |
| 13 </outputs> | 14 </outputs> |