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comparison experimental_design.xml @ 2:f2c4c7151016 draft

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author davidvanzessen
date Mon, 07 Jul 2014 09:45:10 -0400
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1:07a23652bc2a 2:f2c4c7151016
1 <tool id="experimentaldesign_igg" name="ExperimentalDesign" version="1.0">
2 <description> </description>
3 <command interpreter="python">
4 experimental_design.py
5 #for $i, $f in enumerate($patients)
6 "$f.id"
7 #for $j, $g in enumerate($f.samples)
8 ${g.sample}
9 #end for
10
11 #end for
12 --output $out_file
13 </command>
14 <inputs>
15 <repeat name="patients" title="Patient" min="1" default="1">
16 <repeat name="samples" title="Sample" min="1" default="1">
17 <param name="sample" format="tabular" type="data" label="Sample to Process" />
18 </repeat>
19 <param name="id" type="text" label="ID" />
20 </repeat>
21 </inputs>
22 <outputs>
23 <data format="tabular" name="out_file" />
24 </outputs>
25 <help>
26 Step 3 of the Immune Repertoire tools, merges the parsed reports generated in step 2 into one file with an Sample ID.
27 </help>
28
29 </tool>