Mercurial > repos > davidvanzessen > complete_immunerepertoire_igg
diff imgt_loader.sh @ 12:70c8234acaf3 draft default tip
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 23 Jun 2015 07:52:44 -0400 |
| parents | 3287f7b9c47d |
| children |
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--- a/imgt_loader.sh Tue Jun 23 07:52:29 2015 -0400 +++ b/imgt_loader.sh Tue Jun 23 07:52:44 2015 -0400 @@ -11,6 +11,7 @@ gzipType="gzip compressed" zipType="Zip archive" rarType="RAR archive" +zxType="XZ compressed data" if [[ "$f" == *"$zip7Type"* ]]; then echo "7-zip" @@ -21,15 +22,15 @@ if [[ "$f" == *"$tarType"* ]] then echo "tar archive" - echo "Trying: tar xvf $input -C $PWD/files/" - tar xvf $input -C $PWD/$name/files + echo "Trying: tar -xvf $input -C $PWD/files/" + tar -xvf $input -C $PWD/$name/files fi if [[ "$f" == *"$bzip2Type"* ]] then echo "bzip2 compressed data" - echo "Trying: tar jxf $input -C $PWD/files/" - tar jxf $input -C $PWD/$name/files + echo "Trying: tar -jxf $input -C $PWD/files/" + tar -jxf $input -C $PWD/$name/files fi if [[ "$f" == *"$gzipType"* ]] @@ -52,6 +53,15 @@ echo "Trying: unrar e $input $PWD/files/" unrar e $input $PWD/$name/files fi + +if [[ "$f" == *"$zxType"* ]] +then + echo "ZX archive" + echo "Trying: tar -xJf $input -C $PWD/$name/files/" + tar -xJf $input -C $PWD/$name/files/ +fi + + find $PWD/$name/files -iname "1_*" -exec cat {} + > $PWD/$name/summ.txt find $PWD/$name/files -iname "5_*" -exec cat {} + > $PWD/$name/aa.txt find $PWD/$name/files -iname "6_*" -exec cat {} + > $PWD/$name/junction.txt