Mercurial > repos > davidvanzessen > complete_immunerepertoire_igg
diff tool_dependencies.xml @ 0:7d97fa9a0423 draft
Uploaded
author | davidvanzessen |
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date | Fri, 09 May 2014 09:35:32 -0400 |
parents | |
children | 778a9d130904 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri May 09 09:35:32 2014 -0400 @@ -0,0 +1,20 @@ +<?xml version="1.0"?> +<tool_dependency> + <set_environment version="1.0"> + </set_environment> + + <package name="igBlastn" version="1.0.0"> + <install version="1.0"> + <actions> + <action type="shell_command">wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz -P $INSTALL_DIR</action> + <action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> + </action> + </actions> + </install> + <readme> + Downloads the igblastn-1.0.0 executable from NCBI and uses a fixed database included in this tool. + </readme> + </package> +</tool_dependency>