Mercurial > repos > davidvanzessen > combined_immune_repertoire_pipeline

comparison combined.sh @ 1:9b2567a3ecc9 draft

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author davidvanzessen
date Wed, 20 Nov 2013 10:07:25 -0500
parents 4e3df2384422
children bb8d5c67c129
comparison
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0:4e3df2384422 1:9b2567a3ecc9
1 #!/bin/bash 1 #!/bin/bash
2
3 export IGDATA=/home/david/Galaxy/galaxy-dist/toolsheddependencies/igBlastn/1.0.0/davidvanzessen/igblast_human/1c64c977624e/ncbi-igblast-1.0.0/;
4 2
5 html=${@:(-2):1} 3 html=${@:(-2):1}
6 imageDir=${@:(-1):1} 4 imageDir=${@:(-1):1}
7 dir="$(cd "$(dirname "$0")" && pwd)" 5 dir="$(cd "$(dirname "$0")" && pwd)"
8 fileCount=`expr $# - 2` 6 fileCount=`expr $# - 2`