Mercurial > repos > davidvanzessen > combined_immune_repertoire_pipeline
comparison combined.xml @ 0:4e3df2384422 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Wed, 20 Nov 2013 10:00:28 -0500 |
| parents | |
| children | 2b1d3d6843e8 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:4e3df2384422 |
|---|---|
| 1 <tool id="immunerepertoirecombined" name="Immunerepertoire combined" version="1.0"> | |
| 2 <description>pipeline</description> | |
| 3 <command interpreter="bash"> | |
| 4 combined.sh | |
| 5 #for $i, $f in enumerate($files) | |
| 6 ${f.file} | |
| 7 ${f.id} | |
| 8 #end for | |
| 9 $out_file $out_file.files_path | |
| 10 </command> | |
| 11 <inputs> | |
| 12 <repeat name="files" title="File" min="1" default="1"> | |
| 13 <param name="file" format="fasta" type="data" label="Data to Process" /> | |
| 14 <param name="id" type="text" label="ID" /> | |
| 15 </repeat> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="html" name="out_file" /> | |
| 19 </outputs> | |
| 20 <help> | |
| 21 The entire Immune Repertoire pipeline as a single tool, input several FASTA files, give them an ID and it will BLAST, parse, merge and plot them. | |
| 22 </help> | |
| 23 <requirements> | |
| 24 <requirement type="package" version="1.0.0">igBlastn</requirement> | |
| 25 </requirements> | |
| 26 </tool> | |
| 27 |