Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

comparison wrapper.sh @ 8:fa240d1c57a9 draft

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Uploaded
author davidvanzessen
date Thu, 18 Sep 2014 10:28:24 -0400
parents 68c6c7624ffc
children 58a28427930e
comparison
equal deleted inserted replaced
7:68c6c7624ffc 8:fa240d1c57a9
225 done < tmp.txt 225 done < tmp.txt
226 echo "</tbody></table>" >> $html 226 echo "</tbody></table>" >> $html
227 echo "</td><td style='vertical-align:top;'><div id='result_div_${patient}_freq'></div></td></tr></table>" >> $html 227 echo "</td><td style='vertical-align:top;'><div id='result_div_${patient}_freq'></div></td></tr></table>" >> $html
228 echo "</div>" >> $html 228 echo "</div>" >> $html
229 echo "<div class='tabbertab' title='Graphs frequency'>" >> $html 229 echo "<div class='tabbertab' title='Graphs frequency'>" >> $html
230 echo "<a href='${patient}_reads_total_all.png'><img src='${patient}_reads.png' width='1280' height='720' /></a><br />" >> $html 230 echo "<a href='${patient}_freq_total_all.png'><img src='${patient}_freq_total_all.png' width='1280' height='720' /></a><br />" >> $html
231 echo "<a href='${patient}_reads_indiv_all.png'><img src='${patient}_reads_all.png' width='1280' height='720' /></a><br />" >> $html 231 echo "<a href='${patient}_freq_indiv_all.png'><img src='${patient}_freq_indiv_all.png' width='1280' height='720' /></a><br /></div>" >> $html
232 232
233 tail -n+2 ${patient}_reads.txt | sed "s/>//" > tmp.txt 233 tail -n+2 ${patient}_reads.txt | sed "s/>//" > tmp.txt
234 echo "<div class='tabbertab' title='Data reads'>" >> $html 234 echo "<div class='tabbertab' title='Data reads'>" >> $html
235 echo "<table><tr><td style='vertical-align:top;'>" >> $html 235 echo "<table><tr><td style='vertical-align:top;'>" >> $html
236 echo "<table border = 1 class='result_table summary_table' id='summary_table_${patient}_reads'>" >> $html 236 echo "<table border = 1 class='result_table summary_table' id='summary_table_${patient}_reads'>" >> $html
275 done < tmp.txt 275 done < tmp.txt
276 echo "</tbody></table>" >> $html 276 echo "</tbody></table>" >> $html
277 echo "</td><td style='vertical-align:top;'><div id='result_div_${patient}_reads'></div></td></tr></table>" >> $html 277 echo "</td><td style='vertical-align:top;'><div id='result_div_${patient}_reads'></div></td></tr></table>" >> $html
278 echo "</div>" >> $html 278 echo "</div>" >> $html
279 echo "<div class='tabbertab' title='Graphs reads'>" >> $html 279 echo "<div class='tabbertab' title='Graphs reads'>" >> $html
280 echo "<a href='${patient}_reads_total_all.png'><img src='${patient}_reads.png' width='1280' height='720' /></a><br />" >> $html 280 echo "<a href='${patient}_reads_total_all.png'><img src='${patient}_reads_total_all.png' width='1280' height='720' /></a><br />" >> $html
281 echo "<a href='${patient}_reads_indiv_all.png'><img src='${patient}_reads_all.png' width='1280' height='720' /></a><br />" >> $html 281 echo "<a href='${patient}_reads_indiv_all.png'><img src='${patient}_reads_indiv_all.png' width='1280' height='720' /></a><br /></div>" >> $html
282 echo "</div>" >> $html 282 echo "</div>" >> $html
283 echo "</div>" >> $html 283 echo "</div>" >> $html
284 echo "</html>" >> $html 284 echo "</html>" >> $html
285 done < triplets.txt 285 done < triplets.txt
286 rm tmp.txt 286 rm tmp.txt