Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

comparison wrapper.sh @ 3:f9316f7676cc draft

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Uploaded
author davidvanzessen
date Tue, 26 Aug 2014 09:53:22 -0400
parents 8d562506f4f9
children f11df36f43bb
comparison
equal deleted inserted replaced
2:8d562506f4f9 3:f9316f7676cc
1 #!/bin/bash 1 #!/bin/bash
2 2
3 inputFile=$1 3 inputFile=$1
4 outputFile=$2 4 outputFile=$2
5 outputDir=$3 5 outputDir=$3
6 min_freq=$4
7 min_cells=$5
6 8
7 dir="$(cd "$(dirname "$0")" && pwd)" 9 dir="$(cd "$(dirname "$0")" && pwd)"
8 mkdir $outputDir 10 mkdir $outputDir
9 11
10 Rscript --verbose $dir/RScript.r $inputFile $outputDir 2>&1 12 echo "testtestsetset" > $outputFile
13
14 Rscript --verbose $dir/RScript.r $inputFile $outputDir $outputFile $min_freq $min_cells 2>&1
11 cp $dir/jquery-1.11.0.min.js $outputDir 15 cp $dir/jquery-1.11.0.min.js $outputDir
12 cp $dir/script.js $outputDir 16 cp $dir/script.js $outputDir
13 cp $dir/style.css $outputDir 17 cp $dir/style.css $outputDir
14 cp $dir/tabber.js $outputDir 18 cp $dir/tabber.js $outputDir
15 19