Mercurial > repos > davidvanzessen > change_o
comparison makedb.sh @ 0:dda9b2e72e2b draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 03 May 2016 09:52:21 -0400 |
| parents | |
| children | 326165da9ece |
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| -1:000000000000 | 0:dda9b2e72e2b |
|---|---|
| 1 #!/bin/bash | |
| 2 dir="$(cd "$(dirname "$0")" && pwd)" | |
| 3 | |
| 4 input=$1 | |
| 5 noparse=$2 | |
| 6 scores=$3 | |
| 7 regions=$4 | |
| 8 output=$5 | |
| 9 | |
| 10 if [ "true" == "$noparse" ] ; then | |
| 11 noparse="--noparse" | |
| 12 else | |
| 13 noparse="" | |
| 14 fi | |
| 15 | |
| 16 if [ "true" == "$scores" ] ; then | |
| 17 scores="--scores" | |
| 18 else | |
| 19 scores="" | |
| 20 fi | |
| 21 | |
| 22 if [ "true" == "$regions" ] ; then | |
| 23 regions="--regions" | |
| 24 else | |
| 25 regions="" | |
| 26 fi | |
| 27 | |
| 28 mkdir $PWD/outdir | |
| 29 | |
| 30 /data/users/david/anaconda3/bin/python $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions | |
| 31 | |
| 32 mv $PWD/outdir/output_db-pass.tab $output |