Mercurial > repos > davidvanzessen > change_o

comparison define_clones.sh @ 2:6f57d43a1f4c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Thu, 11 Aug 2016 07:40:36 -0400
parents 326165da9ece
children 3ddd933dd7a2
comparison
equal deleted inserted replaced
1:326165da9ece 2:6f57d43a1f4c
19 link=$8 19 link=$8
20 dist=$9 20 dist=$9
21 output=${10} 21 output=${10}
22 output2=${11} 22 output2=${11}
23 23
24 #/data/users/david/anaconda3/bin/python $dir/DefineClones.py bygroup -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --mode $mode --act $act --model $model --dist $dist --norm $norm --sym $sym --link $link 24 /data/users/david/anaconda3/bin/python $dir/DefineClones.py bygroup -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --mode $mode --act $act --model $model --dist $dist --norm $norm --sym $sym --link $link
25 /home/galaxy/anaconda3/bin/python $dir/DefineClones.py bygroup -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --mode $mode --act $act --model $model --dist $dist --norm $norm --sym $sym --link $link 25 #/home/galaxy/anaconda3/bin/python $dir/DefineClones.py bygroup -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --mode $mode --act $act --model $model --dist $dist --norm $norm --sym $sym --link $link
26 26
27 Rscript $dir/define_clones.r $PWD/outdir/output_clone-pass.tab $output2 2>&1 27 Rscript $dir/define_clones.r $PWD/outdir/output_clone-pass.tab $output2 2>&1
28 else 28 else
29 method=$3 29 method=$3
30 output=$4 30 output=$4
31 output2=$5 31 output2=$5
32 32
33 #/data/users/david/anaconda3/bin/python $dir/DefineClones.py hclust -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --method $method 33 /data/users/david/anaconda3/bin/python $dir/DefineClones.py hclust -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --method $method
34 /home/galaxy/anaconda3/bin/python $dir/DefineClones.py hclust -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --method $method 34 #/home/galaxy/anaconda3/bin/python $dir/DefineClones.py hclust -d $PWD/input.tab --nproc 4 --outdir $PWD/outdir --outname output --method $method
35 35
36 Rscript $dir/define_clones.r $PWD/outdir/output_clone-pass.tab $output2 2>&1 36 Rscript $dir/define_clones.r $PWD/outdir/output_clone-pass.tab $output2 2>&1
37 fi 37 fi
38 38
39 cp $PWD/outdir/output_clone-pass.tab $output 39 cp $PWD/outdir/output_clone-pass.tab $output