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comparison define_clones.xml @ 1:326165da9ece draft

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author davidvanzessen
date Thu, 04 Aug 2016 08:59:47 -0400
parents dda9b2e72e2b
children 3ddd933dd7a2
comparison
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0:dda9b2e72e2b 1:326165da9ece
1 <tool id="change_o_define_clones_galaxy" name="Define Clones" version="1.0"> 1 <tool id="change_o_define_clones_galaxy" name="Define Clones" version="1.0">
2 <description>Change-O</description> 2 <description>Change-O</description>
3 <command interpreter="bash"> 3 <command interpreter="bash">
4 #if $input_type.input_type_select=="bygroup" 4 #if $input_type.input_type_select=="bygroup"
5 define_clones.sh bygroup $input $input_type.mode $input_type.act $input_type.model $input_type.norm $input_type.sym $input_type.link $input_type.dist $out_file 5 define_clones.sh bygroup $input $input_type.mode $input_type.act $input_type.model $input_type.norm $input_type.sym $input_type.link $input_type.dist $out_file $out_file2
6 #else 6 #else
7 define_clones.sh hclust $input $input_type.method $out_file 7 define_clones.sh hclust $input $input_type.method $out_file $out_file2
8 #end if 8 #end if
9 </command> 9 </command>
10 <inputs> 10 <inputs>
11 <param name="input" type="data" format="tabular" label="A Change-O DB file" /> 11 <param name="input" type="data" format="tabular" label="A Change-O DB file" />
12 <conditional name="input_type"> 12 <conditional name="input_type">
54 </when> 54 </when>
55 </conditional> 55 </conditional>
56 </inputs> 56 </inputs>
57 <outputs> 57 <outputs>
58 <data format="tabular" name="out_file" label = "Change-o DB clones ${input.name}"/> 58 <data format="tabular" name="out_file" label = "Change-o DB clones ${input.name}"/>
59 <data format="tabular" name="out_file2" label = "Change-o DB clones info ${input.name}"/>
59 </outputs> 60 </outputs>
60 <citations> 61 <citations>
61 <citation type="doi">10.1093/bioinformatics/btv359</citation> 62 <citation type="doi">10.1093/bioinformatics/btv359</citation>
62 </citations> 63 </citations>
63 <help> 64 <help>