Mercurial > repos > davidvanzessen > baseline_fasta_generator

comparison baseline_generator.xml @ 3:be17e1e7dc2b draft

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author davidvanzessen
date Wed, 23 Jul 2014 07:51:10 -0400
parents 85f18c2f74dd
children aa4b95abef11
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2:fac36e2248fd 3:be17e1e7dc2b
1 <tool id="baseline_fasta_generator" name="Baseline generator" version="1.0"> 1 <tool id="baseline_fasta_generator" name="Baseline generator" version="1.0">
2 <description>Generate baseline fasta file</description> 2 <description>Generate baseline fasta file</description>
3 <command interpreter="python"> 3 <command interpreter="bash">
4 script.py --input $in_file --ref $reference --output $out_file 4 wrapper.sh $in_file $reference $out_file
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="in_file" type="data" label="Input excel file" /> 7 <param name="in_file" type="data" label="Input excel file" />
8 <param name="reference" type="data" format="fasta" label="Reference fasta file" /> 8 <param name="reference" type="data" format="fasta" label="Reference fasta file" />
9 </inputs> 9 </inputs>