Mercurial > repos > davidvanzessen > baseline_fasta_generator

comparison baseline_generator.xml @ 4:aa4b95abef11 draft

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author davidvanzessen
date Wed, 23 Jul 2014 10:13:05 -0400
parents be17e1e7dc2b
children 048f8cdbb6d2
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3:be17e1e7dc2b 4:aa4b95abef11
2 <description>Generate baseline fasta file</description> 2 <description>Generate baseline fasta file</description>
3 <command interpreter="bash"> 3 <command interpreter="bash">
4 wrapper.sh $in_file $reference $out_file 4 wrapper.sh $in_file $reference $out_file
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="in_file" type="data" label="Input excel file" /> 7 <param name="in_file" type="data" label="Input excel or IMGT zip file" />
8 <param name="reference" type="data" format="fasta" label="Reference fasta file" /> 8 <param name="reference" type="data" format="fasta" label="Reference fasta file" />
9 </inputs> 9 </inputs>
10 <outputs> 10 <outputs>
11 <data format="fasta" name="out_file" label = "Baseline generator on $in_file.name with $reference.name"/> 11 <data format="fasta" name="out_file" label = "Baseline generator on $in_file.name with $reference.name"/>
12 </outputs> 12 </outputs>