Mercurial > repos > davidvanzessen > baseline_fasta_generator
comparison baseline_generator.xml @ 0:91221003f5ee draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 15 Jul 2014 08:51:22 -0400 |
| parents | |
| children | 85f18c2f74dd |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:91221003f5ee |
|---|---|
| 1 <tool id="baseline_fasta_generator" name="Baseline generator" version="1.0"> | |
| 2 <description>Generate baseline fasta file</description> | |
| 3 <command interpreter="python"> | |
| 4 script.py --input $in_file --ref $reference --output $out_file | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="in_file" type="data" label="Input fasta file" /> | |
| 8 <param name="reference" type="data" format="fasta" label="Reference fasta file" /> | |
| 9 </inputs> | |
| 10 <outputs> | |
| 11 <data format="fasta" name="out_file" label = "Baseline generator on $in_file.name with $reference.name"/> | |
| 12 </outputs> | |
| 13 <help> | |
| 14 Gur Yaari; Mohamed Uduman; Steven H. Kleinstein. Quantifying selection in high-throughput Immunoglobulin sequencing data sets. Nucleic Acids Res. 2012 May 27. | |
| 15 | |
| 16 Mohamed Uduman; Gur Yaari; Uri Hershberg; Mark J. Shlomchik; Steven H. Kleinstein. Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504. | |
| 17 </help> | |
| 18 </tool> |