Mercurial > repos > davidvanzessen > baseline_bayesian_estimation

comparison wrapper.sh @ 1:e8dd8474aecb draft

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author davidvanzessen
date Tue, 15 Jul 2014 09:00:24 -0400
parents d685e7ba0ed4
children 94fada165724
comparison
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0:d685e7ba0ed4 1:e8dd8474aecb
14 outID=${10} 14 outID=${10}
15 outFile=${11} 15 outFile=${11}
16 outFile2=${12} 16 outFile2=${12}
17 17
18 cd $dir 18 cd $dir
19 Rscript --verbose $dir/Baseline_Main.r $testID $species $substitutionModel $mutabilityModel $clonal $fixIndels $region $input $dir/ $outID 2> /dev/null 19 Rscript --verbose $dir/Baseline_Main.r $testID $species $substitutionModel $mutabilityModel $clonal $fixIndels $region $input $dir/ $outID 2>&1
20 20
21 mv $dir/${outID}.txt $outFile 21 mv $dir/${outID}.txt $outFile
22 mv $dir/${outID}.RData $outFile2 22 mv $dir/${outID}.RData $outFile2
23 23
24 #tail -n+2 $outDir/${outID}.txt > $outDir/tmp.txt 24 #tail -n+2 $outDir/${outID}.txt > $outDir/tmp.txt