Mercurial > repos > davidvanzessen > baseline_bayesian_estimation

comparison wrapper.sh @ 7:45a5e3bd9df4 draft

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author davidvanzessen
date Mon, 18 Aug 2014 05:54:51 -0400
parents 8a4183eed741
children 525b58fc8622
comparison
equal deleted inserted replaced
6:8a4183eed741 7:45a5e3bd9df4
46 unzip $current -d $PWD/$id/ >> $PWD/unziplog.log 46 unzip $current -d $PWD/$id/ >> $PWD/unziplog.log
47 summaryfile="$PWD/summary_${id}.txt" 47 summaryfile="$PWD/summary_${id}.txt"
48 gappedfile="$PWD/gappednt_${id}.txt" 48 gappedfile="$PWD/gappednt_${id}.txt"
49 filtered="$PWD/filtered_${id}.txt" 49 filtered="$PWD/filtered_${id}.txt"
50 filecount=`ls -l $PWD/$id/ | wc -l` 50 filecount=`ls -l $PWD/$id/ | wc -l`
51 if [ "$filecount" -eq "1" ] 51 if [[ "$filecount" -eq "2" ]]
52 then 52 then
53 cat $PWD/$id/*/1_* > $summaryfile 53 cat $PWD/$id/*/1_* > $summaryfile
54 cat $PWD/$id/*/2_* > $gappedfile 54 cat $PWD/$id/*/2_* > $gappedfile
55 else 55 else
56 cat $PWD/$id/1_* > $summaryfile 56 cat $PWD/$id/1_* > $summaryfile