Mercurial > repos > davidvanzessen > argalaxy_tools

diff igblast/igblast.sh @ 14:dca3273a7291 draft

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author davidvanzessen
date Fri, 07 Aug 2015 08:07:42 -0400
parents 010402c959aa
children 6e068ef43336
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--- a/igblast/igblast.sh	Fri Aug 07 05:52:21 2015 -0400
+++ b/igblast/igblast.sh	Fri Aug 07 08:07:42 2015 -0400
@@ -10,6 +10,6 @@
 
 echo "$input $species $locus $output"
 
-java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -cf -S $species -R $locus ${input} $PWD/blasted_output 2>&1
+java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -S $species -R $locus ${input} $PWD/blasted_output 2>&1
 
 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1