Mercurial > repos > davidvanzessen > argalaxy_tools

diff igblast/igblast.sh @ 7:c5cffbd8fe9d draft

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author davidvanzessen
date Thu, 30 Jul 2015 09:53:27 -0400
parents c7c7000de220
children 34d5e6df3247
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--- a/igblast/igblast.sh	Thu Jul 30 09:48:10 2015 -0400
+++ b/igblast/igblast.sh	Thu Jul 30 09:53:27 2015 -0400
@@ -10,6 +10,6 @@
 
 echo "$input $species $locus $output"
 
-java -jar igblastwrp.jar -cf -S $species -R $locus ${input} $PWD/blasted_output
+java -jar $IGBLASTWRP/igblastwrp.jar -cf -S $species -R $locus ${input} $PWD/blasted_output
 
 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1