Mercurial > repos > davidvanzessen > argalaxy_tools
diff tool_dependencies.xml @ 58:a073fa12ef98 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Fri, 18 Mar 2016 08:02:22 -0400 |
| parents | 16c7fc1c4bf8 |
| children |
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--- a/tool_dependencies.xml Fri Mar 18 07:50:34 2016 -0400 +++ b/tool_dependencies.xml Fri Mar 18 08:02:22 2016 -0400 @@ -1,24 +1,36 @@ <?xml version="1.0"?> <tool_dependency> - <set_environment version="1.0"> - </set_environment> - - <package name="blastn" version="1.0"> + <package name="igblastwrp" version="0.6"> <install version="1.0"> <actions> - <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action> - <action type="move_file"> - <source>bin/blastn</source> - <destination>$INSTALL_DIR</destination> - </action> - <action type="set_environment"> - <environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable> - </action> + <action type="download_by_url">https://github.com/mikessh/higblast/releases/download/v0.6/igblastwrapper_linux64.tar.gz</action> + <action type="move_file"> + <source>bin</source> + <destination>$INSTALL_DIR/</destination> + </action> + <action type="move_file"> + <source>data</source> + <destination>$INSTALL_DIR/</destination> + </action> + <action type="move_file"> + <source>igblastwrp.jar</source> + <destination>$INSTALL_DIR/</destination> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="IGBLASTWRP">$INSTALL_DIR/</environment_variable> + </action> </actions> </install> <readme> - downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable +Downloads https://github.com/mikessh/higblast/ </readme> </package> + <package name="weblogo" version="3.3"> + <repository changeset_revision="18cb94906560" name="package_weblogo_3_3" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <!-- + <package name="circostools" version="0.20"> + <repository name="package_circostools_0_20" owner="iuc" /> + </package> + --> </tool_dependency> -
