Mercurial > repos > davidvanzessen > argalaxy_tools

diff igparse.xml @ 58:a073fa12ef98 draft

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author davidvanzessen
date Fri, 18 Mar 2016 08:02:22 -0400
parents f90fbc15b35a
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/igparse.xml	Fri Mar 18 08:02:22 2016 -0400
@@ -0,0 +1,15 @@
+<tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0">
+	<description> </description>
+	<command interpreter="perl">
+		igblastparser/igparse.pl $input 0 2>/dev/null | grep -v "D:" | cut -f2- > $output
+	</command>
+	<inputs>
+		<param name="input" type="data" format="text" label="igBLASTn report"/>
+	</inputs>
+	<outputs>
+		<data name="output" format="tabular" label="${input.name}-parsed" />
+	</outputs>
+	<help>
+		Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
+	</help>
+</tool>