--- a/report_clonality_igg.xml	Fri Jan 29 05:39:58 2016 -0500
+++ b/report_clonality_igg.xml	Fri Jan 29 08:10:21 2016 -0500
@@ -2,9 +2,9 @@
 	<description> </description>
 	<command interpreter="bash">
 #if $gene_selection.source == "imgtdb"		
-	report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "${gene_selection.species}" "${gene_selection.locus}" $filterproductive $clonality_method $filter_uniques
+	report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "${gene_selection.species}" "${gene_selection.locus}" $filterproductive $clonality_method
 #else
-	report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "custom" "${gene_selection.vgenes};${gene_selection.dgenes};${gene_selection.jgenes}" $filterproductive $clonality_method $filter_uniques
+	report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "custom" "${gene_selection.vgenes};${gene_selection.dgenes};${gene_selection.jgenes}" $filterproductive $clonality_method
 #end if
 	</command>
 	<inputs>
@@ -95,11 +95,6 @@
 			<option value="boyd">R Package</option>
 		</param>
 		
-		<param name="filter_uniques" type="select" label="Filter unique sequences" help="Filter out the sequences (based on CDR1, FR2, CDR2, FR3 and CDR3) that only occur once.">
-			<option value="yes">Yes</option>
-			<option value="no">No</option>
-		</param>
-		
 	</inputs>
 	<outputs>
 		<data format="html" name="out_file" />