Mercurial > repos > davidvanzessen > argalaxy_tools

diff gene_identification.py @ 57:16c7fc1c4bf8 draft

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author davidvanzessen
date Fri, 18 Mar 2016 07:50:34 -0400
parents 2eb94c08e550
children
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--- a/gene_identification.py	Fri Mar 18 06:46:26 2016 -0400
+++ b/gene_identification.py	Fri Mar 18 07:50:34 2016 -0400
@@ -40,11 +40,12 @@
 			
 print "Number of input sequences:", len(dic)
 
+#old cm sequence: gggagtgcatccgccccaacccttttccccctcgtctcctgtgagaattccc
+
 #lambda/kappa reference sequence
 searchstrings = {"ca": "catccccgaccagccccaaggtcttcccgctgagcctctgcagcacccagccagatgggaacgtggtcatcgcctgcctgg",
                  "cg": "ctccaccaagggcccatcggtcttccccctggcaccctcctccaagagcacctctgggggcacagcggccctgggctgcctggtcaaggactacttccccgaaccggtgacggtgtcgtggaactcaggcgccctgaccag",
-                 "cm": "gggagtgcatccgccccaacc"}
-                 #"cm": "gggagtgcatccgccccaacccttttccccctcgtctcctgtgagaattccc"}
+                 "cm": "gggagtgcatccgccccaacc"} #new (shorter) cm sequence
 
 compiledregex = {"ca": [],
                  "cg": [],