diff tool_dependencies.xml @ 12:010402c959aa draft

Uploaded
author davidvanzessen
date Tue, 04 Aug 2015 10:00:20 -0400
parents 0510cf1f7cbc
children 0f6885b14628
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line diff
--- a/tool_dependencies.xml	Tue Aug 04 09:59:26 2015 -0400
+++ b/tool_dependencies.xml	Tue Aug 04 10:00:20 2015 -0400
@@ -1,24 +1,28 @@
 <?xml version="1.0"?>
 <tool_dependency>
-	<set_environment version="1.0">            
-  </set_environment>
-    
-	<package name="blastn" version="1.0"> 
+    <package name="igblastwrp" version="0.6">
         <install version="1.0">
             <actions>
-							<action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action>
-							<action type="move_file">
-								<source>bin/blastn</source>
-								<destination>$INSTALL_DIR</destination>
-							</action>
-							<action type="set_environment">
-								<environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable>
-							</action>
+                <action type="download_by_url">https://github.com/mikessh/higblast/releases/download/v0.6/igblastwrapper_linux64.tar.gz</action>
+                <action type="move_file">
+                    <source>bin</source>
+                    <destination>$INSTALL_DIR/</destination>
+                </action>
+                <action type="move_file">
+                    <source>data</source>
+                    <destination>$INSTALL_DIR/</destination>
+                </action>
+                <action type="move_file">
+                    <source>igblastwrp.jar</source>
+                    <destination>$INSTALL_DIR/</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="IGBLASTWRP" action="set_to">$INSTALL_DIR/</environment_variable>
+                </action>
             </actions>
         </install>
         <readme>
-					downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable
+Downloads https://github.com/mikessh/higblast/
         </readme>
     </package>
 </tool_dependency>
-