Mercurial > repos > davidvanzessen > argalaxy_tools

comparison report_clonality/r_wrapper.sh @ 48:d08dfc8d5225 draft

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Uploaded
author davidvanzessen
date Wed, 27 Jan 2016 10:36:35 -0500
parents d97e1421aa86
children 5ba0377b7737
comparison
equal deleted inserted replaced
47:d97e1421aa86 48:d08dfc8d5225
33 cp $dir/jquery-1.11.0.min.js $outputDir 33 cp $dir/jquery-1.11.0.min.js $outputDir
34 samples=`cat $outputDir/samples.txt` 34 samples=`cat $outputDir/samples.txt`
35 35
36 echo "<html><center><h1><a href='index.html'>Click here for the results</a></h1>Tip: Open it in a new tab (middle mouse button or right mouse button -> 'open in new tab' on the link above)<br />" > $2 36 echo "<html><center><h1><a href='index.html'>Click here for the results</a></h1>Tip: Open it in a new tab (middle mouse button or right mouse button -> 'open in new tab' on the link above)<br />" > $2
37 echo "<table border = 1>" >> $2 37 echo "<table border = 1>" >> $2
38 echo "<thead><tr><th>Sample/Replicate</th><th>All</th><th>Removed</th><th>Productive</th><th>Unique Productive</th><th>Unproductive</th><th>Unique Unproductive</th></tr></thead>" >> $2 38 echo "<thead><tr><th>Sample/Replicate</th><th>Input</th><th>Removed</th><th>All</th><th>Productive</th><th>Unique Productive</th><th>Unproductive</th><th>Unique Unproductive</th></tr></thead>" >> $2
39 while IFS=, read sample all productive perc_prod productive_unique perc_prod_un unproductive perc_unprod unproductive_unique perc_unprod_un removed perc_rem 39 while IFS=, read sample all productive perc_prod productive_unique perc_prod_un unproductive perc_unprod unproductive_unique perc_unprod_un removed perc_rem
40 do 40 do
41 echo "<tr><td>$sample</td>" >> $2 41 echo "<tr><td>$sample</td>" >> $2
42
43 echo "<td>$((all+removed))</td>" >> $2
44 echo "<td>${removed} (${perc_rem}%)</td>" >> $2
42 echo "<td>$all</td>" >> $2 45 echo "<td>$all</td>" >> $2
43 echo "<td>${removed} (${perc_rem}%)</td>" >> $2
44 echo "<td>$productive (${perc_prod}%)</td>" >> $2 46 echo "<td>$productive (${perc_prod}%)</td>" >> $2
45 echo "<td>$productive_unique (${perc_prod_un}%)</td>" >> $2 47 echo "<td>$productive_unique (${perc_prod_un}%)</td>" >> $2
46 echo "<td>$unproductive (${perc_unprod}%)</td>" >> $2 48 echo "<td>$unproductive (${perc_unprod}%)</td>" >> $2
47 echo "<td>$unproductive_unique (${perc_unprod_un}%)</td></tr>" >> $2 49 echo "<td>$unproductive_unique (${perc_unprod_un}%)</td></tr>" >> $2
48 done < $outputDir/productive_counting.txt 50 done < $outputDir/productive_counting.txt