# HG changeset patch
# User davidvanzessen
# Date 1463478455 14400
# Node ID db7ff40afce79266fe47ec02de42b99a03df92cc
# Parent  4f46629224d64c7f8a66b3dd38c94a9cf4eb6757
Uploaded

diff -r 4f46629224d6 -r db7ff40afce7 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon May 09 07:00:58 2016 -0400
+++ b/tool_dependencies.xml	Tue May 17 05:47:35 2016 -0400
@@ -1,16 +1,34 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="package_r_3_2_1" version="3.2.1">
-      <repository changeset_revision="9f31a291b305" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="alakazam" version="0.2.3">
         <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
-                    <repository changeset_revision="9f31a291b305" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="package_r_3_2_1" version="3.2.1" />
                     </repository>
                     <package>
+                        https://cran.ism.ac.jp/src/contrib/dplyr_0.4.3.tar.gz
+                    </package>
+                    <package>
+                        https://cran.ism.ac.jp/src/contrib/seqinr_3.1-3.tar.gz
+                    </package>
+                    <package>
+                        https://cran.ism.ac.jp/src/contrib/lazyeval_0.1.10.tar.gz
+                    </package>
+                    <package>
+                        https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/scales_0.3.0.tar.gz
+                    </package>
+                    <package>
+                        https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/ggplot2_1.0.1.tar.gz
+                    </package>
+                    <package>
+                        https://github.com/bgruening/download_store/raw/master/monocle/igraph_0.7.1.tar.gz
+                    </package>
+                    <package>
                         https://bitbucket.org/kleinstein/alakazam/downloads/alakazam_0.2.3.tar.gz
                     </package>
                 </action>