# HG changeset patch
# User davidvanzessen
# Date 1462791658 14400
# Node ID 4f46629224d64c7f8a66b3dd38c94a9cf4eb6757
# Parent  e72666bfb8d3f30ba859c235935001d46fedc96a
Uploaded

diff -r e72666bfb8d3 -r 4f46629224d6 alakazam.r
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/alakazam.r	Mon May 09 07:00:58 2016 -0400
@@ -0,0 +1,6 @@
+library(alakazam)
+
+args <- commandArgs(trailingOnly = TRUE)
+
+input=args[1]
+output=args[2]
diff -r e72666bfb8d3 -r 4f46629224d6 alakazam.sh
--- a/alakazam.sh	Mon May 09 06:06:56 2016 -0400
+++ b/alakazam.sh	Mon May 09 07:00:58 2016 -0400
@@ -1,4 +1,9 @@
 #!/bin/bash
 set -e
+
+dir="$(cd "$(dirname "$0")" && pwd)"
+
 input=$1
 output=$2
+
+Rscript $dir/alakazam.r $input $output
diff -r e72666bfb8d3 -r 4f46629224d6 alakazam.xml
--- a/alakazam.xml	Mon May 09 06:06:56 2016 -0400
+++ b/alakazam.xml	Mon May 09 07:00:58 2016 -0400
@@ -11,7 +11,7 @@
 	</outputs>
 	<requirements>
 		<requirement type="package" version="0.2.3">alakazam</requirement>
-		<requirement type="package" version="3.2.1">package_r_3_2_1</requirement>
+		<!--<requirement type="package" version="3.2.1">package_r_3_2_1</requirement>-->
 	</requirements>
 	<help>