# HG changeset patch
# User crs4
# Date 1489770443 14400
# Node ID 6daabb2d16a45ac35a01f1b34fe2f0d7170ece54
# Parent  98120fb71f9b484640417fd4da52ab72563a1b38
Uploaded

diff -r 98120fb71f9b -r 6daabb2d16a4 conifer3/conifer.py
--- a/conifer3/conifer.py	Fri Mar 17 13:01:08 2017 -0400
+++ b/conifer3/conifer.py	Fri Mar 17 13:07:23 2017 -0400
@@ -586,7 +586,7 @@
     f = pysam.Samfile(args.input[0], "rb")
 
 #    if not f._hasIndex():
-    if not f._has_index():
+    if not f.has_index():
         print("[ERROR] No index found for bam file (%s)!\n[ERROR] You must first index the bam file and include the .bai file in the same directory as the bam file!" % \
               args.input[0])
         sys.exit(0)