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comparison conifer3/conifer.py @ 31:7d5fb7572c69 draft default tip

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author crs4
date Fri, 24 Mar 2017 07:29:07 -0400
parents 67d5be56627a
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30:4efc74c78b24 31:7d5fb7572c69
572 except IOError as e: 572 except IOError as e:
573 print('[ERROR] Cannot read probes file: ', probe_fn) 573 print('[ERROR] Cannot read probes file: ', probe_fn)
574 sys.exit(0) 574 sys.exit(0)
575 575
576 try: 576 try:
577 rpkm_f = open(args.output[0], 'wb’) 577 rpkm_f = open(args.output[0], 'wb')
578 except IOError as e: 578 except IOError as e:
579 print('[ERROR] Cannot open rpkm file for writing: ', args.output) 579 print('[ERROR] Cannot open rpkm file for writing: ', args.output)
580 sys.exit(0) 580 sys.exit(0)
581 581
582 print("[RUNNING] Counting total number of reads in bam file...") 582 print("[RUNNING] Counting total number of reads in bam file...")