Mercurial > repos > cropgeeks > ukseed

changeset 24:27b626c1c120 draft

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Uploaded
author cropgeeks
date Fri, 20 Apr 2018 11:15:45 -0400
parents d3f356978403
children ae6b94d10bff
files ukseed.xml ukseed_stage1.xml ukseed_stage2.xml
diffstat 3 files changed, 6 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/ukseed.xml	Fri Apr 20 09:51:11 2018 -0400
+++ b/ukseed.xml	Fri Apr 20 11:15:45 2018 -0400
@@ -1,7 +1,6 @@
 <tool id="ukseed_dartseq" name="UK SeeD Dartseq Analysis" version="0.0.1">
     <description>run a dartseq analysis</description>
     <requirements>
-		<requirement type="package" version="3.4.3">r</requirement>
         <requirement type="package" version="1.12.2">bioconductor-snprelate</requirement>
 		<requirement type="package" version="1.90b4">plink</requirement>
 		<requirement type="package" version="0.8_14">r-amap</requirement>
--- a/ukseed_stage1.xml	Fri Apr 20 09:51:11 2018 -0400
+++ b/ukseed_stage1.xml	Fri Apr 20 11:15:45 2018 -0400
@@ -1,14 +1,12 @@
 <tool id="ukseed_stage_1" name="UK SeeD Dartseq Analysis #1" version="0.0.2">
     <description>run a dartseq analysis (stage #1)</description>
     <requirements>
-        <!--
+        <requirement type="package" version="1.12.2">bioconductor-snprelate</requirement>
 		<requirement type="package" version="1.90b4">plink</requirement>
-		<requirement type="package" version="1.12.2">bioconductor-snprelate</requirement>
-		<requirement type="package" version="2.10.0">bioconductor-qvalue</requirement>
 		<requirement type="package" version="0.8_14">r-amap</requirement>
-		<requirement type="package" version="1.2_16">r-rgdal</requirement>
 		<requirement type="package" version="1.0">r-dartr</requirement>
-		-->
+		<requirement type="package" version="1.8_0">r-labdsv</requirement>
+		<!--<requirement type="package" version="2.10.0">bioconductor-qvalue</requirement>-->
     </requirements>
 
     <command><![CDATA[
--- a/ukseed_stage2.xml	Fri Apr 20 09:51:11 2018 -0400
+++ b/ukseed_stage2.xml	Fri Apr 20 11:15:45 2018 -0400
@@ -1,14 +1,12 @@
 <tool id="ukseed_stage_2" name="UK SeeD Dartseq Analysis #2" version="0.0.2">
     <description>run a dartseq analysis (stage #2)</description>
     <requirements>
-        <!--
+        <requirement type="package" version="1.12.2">bioconductor-snprelate</requirement>
 		<requirement type="package" version="1.90b4">plink</requirement>
-		<requirement type="package" version="1.12.2">bioconductor-snprelate</requirement>
-		<requirement type="package" version="2.10.0">bioconductor-qvalue</requirement>
 		<requirement type="package" version="0.8_14">r-amap</requirement>
-		<requirement type="package" version="1.2_16">r-rgdal</requirement>
 		<requirement type="package" version="1.0">r-dartr</requirement>
-		-->
+		<requirement type="package" version="1.8_0">r-labdsv</requirement>
+		<!--<requirement type="package" version="2.10.0">bioconductor-qvalue</requirement>-->
     </requirements>
 
     <command><![CDATA[