Mercurial > repos > cropgeeks > flapjack

changeset 2:62161f30a69a draft

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Uploaded
author cropgeeks
date Fri, 17 Feb 2017 09:21:40 -0500
parents 87dae67fb9a3
children 0d040ceef479
files flapjack/datatypes_conf.xml flapjack/flapjack.py
diffstat 2 files changed, 7 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/flapjack/datatypes_conf.xml	Fri Feb 17 09:16:30 2017 -0500
+++ b/flapjack/datatypes_conf.xml	Fri Feb 17 09:21:40 2017 -0500
@@ -6,9 +6,15 @@
     <registration>
        <datatype extension="fjmap" type="galaxy.datatypes.flapjack:FlapjackMapFormat" mimetype="text/plain" display_in_upload="true"/>
        <datatype extension="fjgenotype" type="galaxy.datatypes.flapjack:FlapjackGenotypeFormat" mimetype="text/plain" display_in_upload="true"/>
+       <datatype extension="fjphenotype" type="galaxy.datatypes.flapjack:FlapjackPhenotypeFormat" mimetype="text/plain" display_in_upload="true"/>
+       <datatype extension="fjqtl" type="galaxy.datatypes.flapjack:FlapjackQtlFormat" mimetype="text/plain" display_in_upload="true"/>
+       <datatype extension="fjgraph" type="galaxy.datatypes.flapjack:FlapjackGraphFormat" mimetype="text/plain" display_in_upload="true"/>
     </registration>
     <sniffers>
        <sniffer type="galaxy.datatypes.flapjack:FlapjackMapFormat"/>
        <sniffer type="galaxy.datatypes.flapjack:FlapjackGenotypeFormat"/>
+       <sniffer type="galaxy.datatypes.flapjack:FlapjackPhenotypeFormat"/>
+       <sniffer type="galaxy.datatypes.flapjack:FlapjackQtlFormat"/>
+       <sniffer type="galaxy.datatypes.flapjack:FlapjackGraphFormat"/>
     </sniffers>
 </datatypes>
--- a/flapjack/flapjack.py	Fri Feb 17 09:16:30 2017 -0500
+++ b/flapjack/flapjack.py	Fri Feb 17 09:21:40 2017 -0500
@@ -23,7 +23,7 @@
         return True
 
 class FlapjackPhenotypeFormat(Text):
-    file_ext = "jfphenotye"
+    file_ext = "fjphenotye"
 
     def sniff( self, filename ):
         h = open(filename)