# HG changeset patch
# User cropgeeks
# Date 1510676915 18000
# Node ID 6777844fd6386c5422c4c21b00eff316c6c844b0
# Parent  8855844f40a8e43bd114b14ec9f9218f881788a6
Updated the descriptions of the Flapjack tools to be more consistent.

diff -r 8855844f40a8 -r 6777844fd638 creatematrix.xml
--- a/creatematrix.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/creatematrix.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_creatematrix" name="Flapjack Create Similarity Matrix" version="0.0.1">
-    <description>Create a similarity matrix from the given Genotype file</description>
+    <description>create a similarity matrix from a Flapjack formatted genotype file</description>
     <command><![CDATA[
         java
         #if $adv_opts.show_advanced
diff -r 8855844f40a8 -r 6777844fd638 createproject.xml
--- a/createproject.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/createproject.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_createproject" name="Flapjack CreateProject" version="0.0.1">
-    <description>Create a Flapjack project file from the given input files.</description>
+    <description>create a Flapjack project file from Flapjack formatted input files.</description>
     <command><![CDATA[
         java
         #if $adv_opts.show_advanced
diff -r 8855844f40a8 -r 6777844fd638 fj2hdf5.xml
--- a/fj2hdf5.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/fj2hdf5.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_fj2hdf5" name="Flapjack to HDF5" version="0.0.1">
-    <description>Convert a Flapjack-formatted genotype file into HDF5</description>
+    <description>convert a Flapjack formatted genotype file into HDF5</description>
     <command><![CDATA[
         java
         #if $adv_opts.show_advanced
diff -r 8855844f40a8 -r 6777844fd638 hapmap2fj.xml
--- a/hapmap2fj.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/hapmap2fj.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_hapmap2fj" name="HapMap to Flapjack" version="0.0.1">
-    <description>Convert a HapMap-formatted file into a Flapjack-formatted genotype file</description>
+    <description>convert a HapMap formatted file into a Flapjack formatted genotype file</description>
     <command><![CDATA[
         java
         #if $adv_opts.show_advanced
diff -r 8855844f40a8 -r 6777844fd638 hdf52fj.xml
--- a/hdf52fj.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/hdf52fj.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_hdf52fj" name="HDF5 to Flapjack" version="0.0.1">
-	<description>Convert an HDF5 formatted genotype file into a Flapjack-formatted genotype file</description>
+	<description>convert an HDF5 formatted genotype file into a Flapjack formatted genotype file</description>
 	<command><![CDATA[
 		java
 		#if $adv_opts.show_advanced
diff -r 8855844f40a8 -r 6777844fd638 jnlp.xml
--- a/jnlp.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/jnlp.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -4,6 +4,6 @@
         <param type="data" name="project_file" url="project.flapjack" />
 	</link>
 	<link id="Help" name="(Help)">
-		<url>http://www.bbc.co.uk/</url>
+		<url>http://flapjack.hutton.ac.uk/</url>
 	</link>
 </display>
\ No newline at end of file
diff -r 8855844f40a8 -r 6777844fd638 mabcstats.xml
--- a/mabcstats.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/mabcstats.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_mabcstats" name="Flapjack MABCStats" version="0.0.1">
-	<description>Run marker assisted backcrossing (MABC) analysis on a dataset</description>
+	<description>run marker assisted backcrossing (MABC) analysis on a dataset</description>
 	<command><![CDATA[
 		java
 		#if $adv_opts.show_advanced
diff -r 8855844f40a8 -r 6777844fd638 pedverf1stats.xml
--- a/pedverf1stats.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/pedverf1stats.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_pedverstats" name="Flapjack PedVerStats" version="0.0.1">
-	<description>Run pedigree verification of F1s (known parents) analysis</description>
+	<description>run pedigree verification of F1s (known parents) analysis on a dataset</description>
 	<command><![CDATA[
 		java
 		#if $adv_opts.show_advanced
diff -r 8855844f40a8 -r 6777844fd638 transpose.xml
--- a/transpose.xml	Tue Nov 14 06:42:48 2017 -0500
+++ b/transpose.xml	Tue Nov 14 11:28:35 2017 -0500
@@ -1,5 +1,5 @@
 <tool id="flapjack_transpose" name="Transpose" version="0.0.1">
-	<description>Transpose a file's contents</description>
+	<description>transpose a file's contents</description>
 	<command><![CDATA[
 		java 
 		-cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.Transpose