view flapjack.py @ 8:47c37633573e draft

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author cropgeeks
date Tue, 21 Feb 2017 11:01:57 -0500
parents 1471a0665007
children 44c2d3b788f1
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from galaxy.datatypes.data import Text

class FlapjackMapFormat(Text):
    file_ext = "fjmap"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = MAP":
            h.close()
            return False
        return True

class FlapjackGenotypeFormat(Text):
    file_ext = "fjgenotype"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = GENOTYPE":
            h.close()
            return False
        return True

class FlapjackPhenotypeFormat(Text):
    file_ext = "fjphenotye"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = PHENOTYPE":
            h.close()
            return False
        return True

class FlapjackQtlFormat(Text):
    file_ext = "fjqtl"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = QTL":
            h.close()
            return False
        return True

class FlapjackGraphFormat(Text):
    file_ext = "fjgraph"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = GRAPH":
            h.close()
            return False
        return True