--- a/favalleleheadercreator.xml	Wed Feb 21 09:33:24 2018 -0500
+++ b/favalleleheadercreator.xml	Wed Feb 21 11:54:51 2018 -0500
@@ -1,17 +1,17 @@
-<tool id="intertek_to_flapjack_fav_allele" name="Intertek -> Flapjack favourable allele header formate" version="0.0.1">
+<tool id="intertek_flapjack_snp_sample_processor" name="Intertek / Flapjack - SNP Sample File Processor" version="0.0.1">
 	<description>convert an HDF5 formatted genotype file into a Flapjack formatted genotype file</description>
 	<command><![CDATA[
 		java
 		#if $adv_opts.show_advanced
 			-Xmx$adv_opts.memory
 		#end if
-		-cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.IntertekFavAlleleHeaderCreator
+		-cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.IntertekFlapjackSnpSampleFileProcessor
 		-g $genotype
 		-i $intertek
 		-o $output
 	]]></command>
 	<inputs>
-		<param format="txt" name="intertek" type="data" label="Intertek favourable allele file"
+		<param format="txt" name="intertek" type="data" label="Favourable allele file"
 			help="An Intertek file with favourable and unfavourable allele information for markers."/>
 		<param format="fjgenotype" name="genotype" type="data" label="Flapjack genotype file"
 			help="A Flapjack formatted genotype file with markers which match those in the intertek file so that we can