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comparison createproject.xml @ 6:e8083821455b draft

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author cropgeeks
date Tue, 21 Feb 2017 08:34:36 -0500
parents 735f690bdb76
children 8855844f40a8
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5:735f690bdb76 6:e8083821455b
10 + " -project=<project_file> (required output file)\n");--> 10 + " -project=<project_file> (required output file)\n");-->
11 11
12 <description>Run pedigree verification of F1s (known parents) analysis</description> 12 <description>Run pedigree verification of F1s (known parents) analysis</description>
13 <command><![CDATA[ 13 <command><![CDATA[
14 java -Xmx$memory -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.CreateProject 14 java -Xmx$memory -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.CreateProject
15 -map=$map -genotypes=$genotypes -galaxyHTML=$html -project=$output 15 -map=$map -genotypes=$genotypes
16 ## -galaxyHTML=$html
17 -project=$output
16 ]]> 18 ]]>
17 </command> 19 </command>
18 <inputs> 20 <inputs>
19 <param format="fjmap" name="map" type="data" label="Flapjack map file" 21 <param format="fjmap" name="map" type="data" label="Flapjack map file"
20 help="Flapjack-formatted (tab-delimited text) input file of map data"/> 22 help="Flapjack-formatted (tab-delimited text) input file of map data"/>
33 </param> 35 </param>
34 </inputs> 36 </inputs>
35 <outputs> 37 <outputs>
36 <!-- label="${tool.name} on ${on_string}: project.flapjack" --> 38 <!-- label="${tool.name} on ${on_string}: project.flapjack" -->
37 <data name="output" format="flapjack" /> 39 <data name="output" format="flapjack" />
38 <data name="html" format="html" /> 40 <!--<data name="html" format="html" />-->
39 </outputs> 41 </outputs>
40 42
41 <stdio> 43 <stdio>
42 <exit_code range="1:" /> 44 <exit_code range="1:" />
43 </stdio> 45 </stdio>