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comparison mabcstats.xml @ 56:8a06f49972d0 draft

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Added more optional parameters to mabcstats.xml and pedverf1stats.xml
author cropgeeks
date Wed, 15 Nov 2017 06:42:44 -0500
parents 6777844fd638
children ca8171e44b7e
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55:6777844fd638 56:8a06f49972d0
7 #end if 7 #end if
8 -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.GenerateMabcStats 8 -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.GenerateMabcStats
9 -m $map 9 -m $map
10 -g $genotypes 10 -g $genotypes
11 -q $qtls 11 -q $qtls
12 #if $traits
13 -t $traits
14 #end if
12 -r $parent1 15 -r $parent1
13 -d $parent2 16 -d $parent2
14 -model $model 17 -model $model
15 -c $coverage 18 -c $coverage
16 -o $output 19 -o $output
37 help="Flapjack-formatted (tab-delimited text) input file of genotype data."/> 40 help="Flapjack-formatted (tab-delimited text) input file of genotype data."/>
38 41
39 <param format="fjqtl" name="qtls" type="data" 42 <param format="fjqtl" name="qtls" type="data"
40 label="Flapjack QTL file" 43 label="Flapjack QTL file"
41 help="Flapjack-formatted (tab-delimited text) input file of QTL data."/> 44 help="Flapjack-formatted (tab-delimited text) input file of QTL data."/>
45
46 <param format="fjphenotype" name="traits" type="data"
47 label="Flapjack Trait file"
48 help="Flapjack-formatted (tab-delimited text) input file of trait data."
49 optional="true"/>
42 50
43 <param name="parent1" type="integer" value="1" 51 <param name="parent1" type="integer" value="1"
44 label="Index of recurrent parent" 52 label="Index of recurrent parent"
45 help="The index of the recurrent parent in the genotype file."/> 53 help="The index of the recurrent parent in the genotype file."/>
46 54