Mercurial > repos > cropgeeks > flapjack

comparison mabcstats.xml @ 51:4ba88eb0e03b draft

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Uploaded
author cropgeeks
date Mon, 01 May 2017 08:30:44 -0400
parents 6fd2203fc221
children 3e426561ac83
comparison
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50:6fd2203fc221 51:4ba88eb0e03b
6 java 6 java
7 #if $advanced_options.show_advanced 7 #if $advanced_options.show_advanced
8 -Xmx$advanced_options.memory 8 -Xmx$advanced_options.memory
9 #end if 9 #end if
10 -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.GenerateMabcStats 10 -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.GenerateMabcStats
11 -map=$map 11 -m $map
12 -genotypes=$genotypes 12 -g $genotypes
13 -qtls=$qtls 13 -q $qtls
14 -parent1=$parent1 14 -r $parent1
15 -parent2=$parent2 15 -d $parent2
16 -model=$model 16 -model $model
17 -coverage=$coverage 17 -coverage $coverage
18 #if $advanced_options.show_advanced 18 #if $advanced_options.show_advanced
19 $advanced_options.decimalEnglish 19 $advanced_options.decimalEnglish
20 #end if 20 #end if
21 #if $create_project 21 -o $output
22 -output=$output 22 #if $create_project
23 -project=$project 23 -p $project
24 #end if 24 #end if
25 ]]></command> 25 ]]></command>
26 26
27 <inputs> 27 <inputs>
28 <param format="fjmap" name="map" type="data" label="Flapjack map file" 28 <param format="fjmap" name="map" type="data" label="Flapjack map file"
45 <conditional name="advanced_options"> 45 <conditional name="advanced_options">
46 <param name="show_advanced" type="boolean" label="Enable advanced options" 46 <param name="show_advanced" type="boolean" label="Enable advanced options"
47 truevalue="show" falsevalue=""> 47 truevalue="show" falsevalue="">
48 </param> 48 </param>
49 <when value="show"> 49 <when value="show">
50 <param name="decimalEnglish" type="boolean" truevalue="-decimalEnglish" falsevalue="" checked="True" 50 <param name="decimalEnglish" type="boolean" truevalue="-D" falsevalue="" checked="True"
51 label="Force English-style decimal marks" 51 label="Force English-style decimal marks"
52 help="Always process input data using '.' as the decimal separator, irrespective of this Galaxy's locale settings"/> 52 help="Always process input data using '.' as the decimal separator, irrespective of this Galaxy's locale settings"/>
53 <param name="memory" type="select" label="Memory" 53 <param name="memory" type="select" label="Memory"
54 help="How much memory to use; larger files may require more memory"> 54 help="How much memory to use; larger files may require more memory">
55 <option selected="true" value="64m">64MB</option> 55 <option selected="true" value="64m">64MB</option>