Mercurial > repos > cropgeeks > flapjack

comparison splitbysample.xml @ 78:3f84a298c6ca draft

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author cropgeeks
date Fri, 02 Mar 2018 13:14:38 -0500
parents 84ce7c332dc4
children
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77:6ace5881c494 78:3f84a298c6ca
20 -M "$adv_opts.missingData" 20 -M "$adv_opts.missingData"
21 -S "$adv_opts.hetSep" 21 -S "$adv_opts.hetSep"
22 #end if 22 #end if
23 </command> 23 </command>
24 <inputs> 24 <inputs>
25 <param format="fjgenotype" name="genotypes" type="data" label="Flapjack genotype file" 25 <param format="fjgenotype, tabular, text" name="genotypes" type="data" label="Flapjack genotype file"
26 help="Flapjack-formatted (tab-delimited text) input file of genotype data"/> 26 help="Flapjack-formatted (tab-delimited text) input file of genotype data"/>
27 27
28 <param format="tabular" name="traits" type="data" label="Flapjack phenotype file" 28 <param format="tabular, text" name="traits" type="data" label="Flapjack phenotype file"
29 help="Flapjack-formatted (tab-delimited text) input file of phenotype data"/> 29 help="Flapjack-formatted (tab-delimited text) input file of phenotype data"/>
30 30
31 <param format="fjmap" name="map" type="data" label="Flapjack map file" 31 <param format="fjmap, tabular, text" name="map" type="data" label="Flapjack map file"
32 help="Flapjack-formatted (tab-delimited text) input file of map data" 32 help="Flapjack-formatted (tab-delimited text) input file of map data"
33 optional="true"/> 33 optional="true"/>
34 34
35 <param format="fjqtl" name="qtls" type="data" label="Flapjack QTL file" 35 <param format="fjqtl, tabular, text" name="qtls" type="data" label="Flapjack QTL file"
36 help="Flapjack-formatted (tab-delimited text) input file of QTL data" 36 help="Flapjack-formatted (tab-delimited text) input file of QTL data"
37 optional="true"/> 37 optional="true"/>
38 38
39 <!-- WARNING: Below is the advanced options section shared by all of our tools. If you alter it here you must update the other tools as well.--> 39 <!-- WARNING: Below is the advanced options section shared by all of our tools. If you alter it here you must update the other tools as well.-->
40 <conditional name="adv_opts"> 40 <conditional name="adv_opts">