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comparison pedverf1stats.xml @ 60:33eaa535ceb4 draft

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author cropgeeks
date Wed, 21 Feb 2018 08:47:54 -0500
parents 8a06f49972d0
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59:3ff3493f54d6 60:33eaa535ceb4
17 -f $parent1 17 -f $parent1
18 -s $parent2 18 -s $parent2
19 -o $output 19 -o $output
20 #if $simulate_f1.simulate_f1_selector == False 20 #if $simulate_f1.simulate_f1_selector == False
21 -e $simulate_f1.expectedF1 21 -e $simulate_f1.expectedF1
22 #end if
23 #if $exclude_parents
24 -x
22 #end if 25 #end if
23 #if $adv_opts.show_advanced 26 #if $adv_opts.show_advanced
24 $adv_opts.allChromosomes 27 $adv_opts.allChromosomes
25 $adv_opts.collapseHets 28 $adv_opts.collapseHets
26 -M "$adv_opts.missingData" 29 -M "$adv_opts.missingData"
62 <when value="show"> 65 <when value="show">
63 <param argument="-expectedF1" type="integer" value="3" label="Index of expected F1" 66 <param argument="-expectedF1" type="integer" value="3" label="Index of expected F1"
64 help="The index of the donor parent in the genotype file"/> 67 help="The index of the donor parent in the genotype file"/>
65 </when> 68 </when>
66 </conditional> 69 </conditional>
70
71 <param name="exclude_parents" type="boolean" label="Exclude parental lines which have not been selected."
72 truevalue="true" falsevalue="false" help="Excludes parental lines which have not been selected as the recurrent, or donor parent from the analysis and results.">
73 </param>
67 74
68 <!-- WARNING: Below is the advanced options section shared by all of our tools. If you alter it here you must update the other tools as well.--> 75 <!-- WARNING: Below is the advanced options section shared by all of our tools. If you alter it here you must update the other tools as well.-->
69 <conditional name="adv_opts"> 76 <conditional name="adv_opts">
70 <param name="show_advanced" type="boolean" 77 <param name="show_advanced" type="boolean"
71 label="Enable advanced options" 78 label="Enable advanced options"