Mercurial > repos > cropgeeks > flapjack

annotate jnlp.xml @ 9:44c2d3b788f1 draft

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author cropgeeks
date Tue, 21 Feb 2017 11:05:05 -0500
parents 735f690bdb76
children 78ee00079771
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5
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cropgeeks
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1 <display id="flapjack_project" version="1.0.0" name="display in Flapjack">
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cropgeeks
parents:
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2 <link id="main" name="main">
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cropgeeks
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3 <url>http://genome.ucsc.edu/cgi-bin/hgTracks?db=${qp($bam_file.dbkey)}&amp;hgt.customText=${qp($track.url)}</url>
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cropgeeks
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4 <param type="data" name="bam_file" url="galaxy.bam" />
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cropgeeks
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5 <param type="data" name="bai_file" url="galaxy.bam.bai" metadata="bam_index" /><!-- UCSC expects index file to exist as bam_file_name.bai -->
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cropgeeks
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6 <param type="template" name="track" viewable="True">track type=bam name="${bam_file.name}" bigDataUrl=${bam_file.url} db=${bam_file.dbkey}</param>
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cropgeeks
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7 </link>
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8 </display>