Mercurial > repos > climate > ctsm_fates
comparison test-data/cesm.log @ 0:9fd9fe3c61e9 draft
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"
| author | climate |
|---|---|
| date | Wed, 21 Oct 2020 20:28:55 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:9fd9fe3c61e9 |
|---|---|
| 1 nohup: ignoring input | |
| 2 PIO rearranger options: | |
| 3 comm type =p2p | |
| 4 comm fcd =2denable | |
| 5 max pend req (comp2io) = 0 | |
| 6 enable_hs (comp2io) = T | |
| 7 enable_isend (comp2io) = F | |
| 8 max pend req (io2comp) = 0 | |
| 9 enable_hs (io2comp) = F | |
| 10 enable_isend (io2comp) = T | |
| 11 (seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 12 (seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 13 (seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 14 (seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 1) ( nthreads = 1) | |
| 15 (seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 16 (seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 1) ( nthreads = 1) | |
| 17 (seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 18 (seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 1) ( nthreads = 1) | |
| 19 (seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 20 (seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 1) ( nthreads = 1) | |
| 21 (seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 22 (seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 1) ( nthreads = 1) | |
| 23 (seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 24 (seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 1) ( nthreads = 1) | |
| 25 (seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 26 (seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 1) ( nthreads = 1) | |
| 27 (seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 28 (seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 1) ( nthreads = 1) | |
| 29 (seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 30 (seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 1) ( nthreads = 1) | |
| 31 (seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 32 (seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 1) ( nthreads = 1) | |
| 33 (seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 34 (seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 1) ( nthreads = 1) | |
| 35 (seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 36 (seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 1) ( nthreads = 1) | |
| 37 (seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 38 (seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 1) ( nthreads = 1) | |
| 39 (seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 40 (seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 1) ( nthreads = 1) | |
| 41 (seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 42 (seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 1) ( nthreads = 1) | |
| 43 (seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 44 (seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 1) ( nthreads = 1) | |
| 45 (seq_comm_setcomm) init ID ( 37 IAC ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =) | |
| 46 (seq_comm_joincomm) init ID ( 38 CPLIAC ) join IDs = 2 37 ( npes = 1) ( nthreads = 1) | |
| 47 (seq_comm_jcommarr) init ID ( 35 ALLIACID ) join multiple comp IDs ( npes = 1) ( nthreads = 1) | |
| 48 (seq_comm_joincomm) init ID ( 36 CPLALLIACID ) join IDs = 2 35 ( npes = 1) ( nthreads = 1) | |
| 49 (seq_comm_printcomms) 1 0 1 1 GLOBAL: | |
| 50 (seq_comm_printcomms) 2 0 1 1 CPL: | |
| 51 (seq_comm_printcomms) 3 0 1 1 ALLATMID: | |
| 52 (seq_comm_printcomms) 4 0 1 1 CPLALLATMID: | |
| 53 (seq_comm_printcomms) 5 0 1 1 ATM: | |
| 54 (seq_comm_printcomms) 6 0 1 1 CPLATM: | |
| 55 (seq_comm_printcomms) 7 0 1 1 ALLLNDID: | |
| 56 (seq_comm_printcomms) 8 0 1 1 CPLALLLNDID: | |
| 57 (seq_comm_printcomms) 9 0 1 1 LND: | |
| 58 (seq_comm_printcomms) 10 0 1 1 CPLLND: | |
| 59 (seq_comm_printcomms) 11 0 1 1 ALLICEID: | |
| 60 (seq_comm_printcomms) 12 0 1 1 CPLALLICEID: | |
| 61 (seq_comm_printcomms) 13 0 1 1 ICE: | |
| 62 (seq_comm_printcomms) 14 0 1 1 CPLICE: | |
| 63 (seq_comm_printcomms) 15 0 1 1 ALLOCNID: | |
| 64 (seq_comm_printcomms) 16 0 1 1 CPLALLOCNID: | |
| 65 (seq_comm_printcomms) 17 0 1 1 OCN: | |
| 66 (seq_comm_printcomms) 18 0 1 1 CPLOCN: | |
| 67 (seq_comm_printcomms) 19 0 1 1 ALLROFID: | |
| 68 (seq_comm_printcomms) 20 0 1 1 CPLALLROFID: | |
| 69 (seq_comm_printcomms) 21 0 1 1 ROF: | |
| 70 (seq_comm_printcomms) 22 0 1 1 CPLROF: | |
| 71 (seq_comm_printcomms) 23 0 1 1 ALLGLCID: | |
| 72 (seq_comm_printcomms) 24 0 1 1 CPLALLGLCID: | |
| 73 (seq_comm_printcomms) 25 0 1 1 GLC: | |
| 74 (seq_comm_printcomms) 26 0 1 1 CPLGLC: | |
| 75 (seq_comm_printcomms) 27 0 1 1 ALLWAVID: | |
| 76 (seq_comm_printcomms) 28 0 1 1 CPLALLWAVID: | |
| 77 (seq_comm_printcomms) 29 0 1 1 WAV: | |
| 78 (seq_comm_printcomms) 30 0 1 1 CPLWAV: | |
| 79 (seq_comm_printcomms) 31 0 1 1 ALLESPID: | |
| 80 (seq_comm_printcomms) 32 0 1 1 CPLALLESPID: | |
| 81 (seq_comm_printcomms) 33 0 1 1 ESP: | |
| 82 (seq_comm_printcomms) 34 0 1 1 CPLESP: | |
| 83 (seq_comm_printcomms) 35 0 1 1 ALLIACID: | |
| 84 (seq_comm_printcomms) 36 0 1 1 CPLALLIACID: | |
| 85 (seq_comm_printcomms) 37 0 1 1 IAC: | |
| 86 (seq_comm_printcomms) 38 0 1 1 CPLIAC: | |
| 87 (t_initf) Read in prof_inparm namelist from: drv_in | |
| 88 (t_initf) Using profile_disable= F | |
| 89 (t_initf) profile_timer= 4 | |
| 90 (t_initf) profile_depth_limit= 4 | |
| 91 (t_initf) profile_detail_limit= 2 | |
| 92 (t_initf) profile_barrier= F | |
| 93 (t_initf) profile_outpe_num= 1 | |
| 94 (t_initf) profile_outpe_stride= 0 | |
| 95 (t_initf) profile_single_file= F | |
| 96 (t_initf) profile_global_stats= T | |
| 97 (t_initf) profile_ovhd_measurement= F | |
| 98 (t_initf) profile_add_detail= F | |
| 99 (t_initf) profile_papi_enable= F | |
| 100 | |
| 101 | |
| 102 1 pes participating in computation for CLM | |
| 103 | |
| 104 ----------------------------------- | |
| 105 | |
| 106 NODE# NAME | |
| 107 ( 0) galaxy-tools.novalocal | |
| 108 NetCDF: Invalid dimension ID or name | |
| 109 NetCDF: Invalid dimension ID or name | |
| 110 NetCDF: Invalid dimension ID or name | |
| 111 NetCDF: Invalid dimension ID or name | |
| 112 NetCDF: Invalid dimension ID or name | |
| 113 NetCDF: Variable not found | |
| 114 NetCDF: Invalid dimension ID or name | |
| 115 NetCDF: Invalid dimension ID or name | |
| 116 NetCDF: Invalid dimension ID or name | |
| 117 NetCDF: Invalid dimension ID or name | |
| 118 NetCDF: Invalid dimension ID or name | |
| 119 NetCDF: Invalid dimension ID or name | |
| 120 NetCDF: Invalid dimension ID or name | |
| 121 NetCDF: Invalid dimension ID or name | |
| 122 NetCDF: Invalid dimension ID or name | |
| 123 NetCDF: Invalid dimension ID or name | |
| 124 clmfates_interfaceMod.F90::FatesReadPFTs :: CLM reading ED/FATES PFTs | |
| 125 clmfates_interfaceMod.F90:: reading fates_mort_freezetol | |
| 126 clmfates_interfaceMod.F90:: reading fates_recruit_hgt_min | |
| 127 clmfates_interfaceMod.F90:: reading fates_fire_crown_depth_frac | |
| 128 clmfates_interfaceMod.F90:: reading fates_fire_bark_scaler | |
| 129 clmfates_interfaceMod.F90:: reading fates_fire_crown_kill | |
| 130 clmfates_interfaceMod.F90:: reading fates_recruit_initd | |
| 131 clmfates_interfaceMod.F90:: reading fates_seed_suppl | |
| 132 clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_ballberry | |
| 133 clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_medlyn | |
| 134 clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_intercept | |
| 135 clmfates_interfaceMod.F90:: reading fates_lf_flab | |
| 136 clmfates_interfaceMod.F90:: reading fates_lf_fcel | |
| 137 clmfates_interfaceMod.F90:: reading fates_lf_flig | |
| 138 clmfates_interfaceMod.F90:: reading fates_fr_flab | |
| 139 clmfates_interfaceMod.F90:: reading fates_fr_fcel | |
| 140 clmfates_interfaceMod.F90:: reading fates_fr_flig | |
| 141 clmfates_interfaceMod.F90:: reading fates_leaf_xl | |
| 142 clmfates_interfaceMod.F90:: reading fates_leaf_clumping_index | |
| 143 clmfates_interfaceMod.F90:: reading fates_leaf_c3psn | |
| 144 clmfates_interfaceMod.F90:: reading fates_smpso | |
| 145 clmfates_interfaceMod.F90:: reading fates_smpsc | |
| 146 clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_curvature | |
| 147 clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_intercept | |
| 148 clmfates_interfaceMod.F90:: reading fates_prescribed_npp_canopy | |
| 149 clmfates_interfaceMod.F90:: reading fates_prescribed_npp_understory | |
| 150 clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_canopy | |
| 151 clmfates_interfaceMod.F90:: reading fates_prescribed_mortality_understory | |
| 152 clmfates_interfaceMod.F90:: reading fates_prescribed_recruitment | |
| 153 clmfates_interfaceMod.F90:: reading fates_fire_alpha_SH | |
| 154 clmfates_interfaceMod.F90:: reading fates_allom_frbstor_repro | |
| 155 clmfates_interfaceMod.F90:: reading fates_hydr_p_taper | |
| 156 clmfates_interfaceMod.F90:: reading fates_hydr_rs2 | |
| 157 clmfates_interfaceMod.F90:: reading fates_hydr_srl | |
| 158 clmfates_interfaceMod.F90:: reading fates_hydr_rfrac_stem | |
| 159 clmfates_interfaceMod.F90:: reading fates_hydr_avuln_gs | |
| 160 clmfates_interfaceMod.F90:: reading fates_hydr_p50_gs | |
| 161 clmfates_interfaceMod.F90:: reading fates_mort_bmort | |
| 162 clmfates_interfaceMod.F90:: reading fates_mort_r_size_senescence | |
| 163 clmfates_interfaceMod.F90:: reading fates_mort_ip_size_senescence | |
| 164 clmfates_interfaceMod.F90:: reading fates_mort_r_age_senescence | |
| 165 clmfates_interfaceMod.F90:: reading fates_mort_ip_age_senescence | |
| 166 clmfates_interfaceMod.F90:: reading fates_mort_scalar_coldstress | |
| 167 clmfates_interfaceMod.F90:: reading fates_mort_scalar_cstarvation | |
| 168 clmfates_interfaceMod.F90:: reading fates_mort_scalar_hydrfailure | |
| 169 clmfates_interfaceMod.F90:: reading fates_mort_hf_sm_threshold | |
| 170 clmfates_interfaceMod.F90:: reading fates_mort_hf_flc_threshold | |
| 171 clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha | |
| 172 clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha | |
| 173 clmfates_interfaceMod.F90:: reading fates_leaf_tpuha | |
| 174 clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd | |
| 175 clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd | |
| 176 clmfates_interfaceMod.F90:: reading fates_leaf_tpuhd | |
| 177 clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse | |
| 178 clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse | |
| 179 clmfates_interfaceMod.F90:: reading fates_leaf_tpuse | |
| 180 clmfates_interfaceMod.F90:: reading fates_seed_germination_rate | |
| 181 clmfates_interfaceMod.F90:: reading fates_seed_decay_rate | |
| 182 clmfates_interfaceMod.F90:: reading fates_trim_limit | |
| 183 clmfates_interfaceMod.F90:: reading fates_trim_inc | |
| 184 clmfates_interfaceMod.F90:: reading fates_leaf_diameter | |
| 185 clmfates_interfaceMod.F90:: reading fates_z0mr | |
| 186 clmfates_interfaceMod.F90:: reading fates_displar | |
| 187 clmfates_interfaceMod.F90:: reading fates_phenflush_fraction | |
| 188 clmfates_interfaceMod.F90:: reading fates_phen_cold_size_threshold | |
| 189 clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction | |
| 190 clmfates_interfaceMod.F90:: reading fates_eca_decompmicc | |
| 191 clmfates_interfaceMod.F90:: reading fates_eca_km_nh4 | |
| 192 clmfates_interfaceMod.F90:: reading fates_eca_vmax_nh4 | |
| 193 clmfates_interfaceMod.F90:: reading fates_eca_km_no3 | |
| 194 clmfates_interfaceMod.F90:: reading fates_eca_vmax_no3 | |
| 195 clmfates_interfaceMod.F90:: reading fates_eca_km_p | |
| 196 clmfates_interfaceMod.F90:: reading fates_eca_vmax_p | |
| 197 clmfates_interfaceMod.F90:: reading fates_eca_km_ptase | |
| 198 clmfates_interfaceMod.F90:: reading fates_eca_vmax_ptase | |
| 199 clmfates_interfaceMod.F90:: reading fates_eca_alpha_ptase | |
| 200 clmfates_interfaceMod.F90:: reading fates_eca_lambda_ptase | |
| 201 clmfates_interfaceMod.F90:: reading fates_prescribed_nuptake | |
| 202 clmfates_interfaceMod.F90:: reading fates_prescribed_puptake | |
| 203 clmfates_interfaceMod.F90:: reading fates_rholvis | |
| 204 clmfates_interfaceMod.F90:: reading fates_rholnir | |
| 205 clmfates_interfaceMod.F90:: reading fates_rhosvis | |
| 206 clmfates_interfaceMod.F90:: reading fates_rhosnir | |
| 207 clmfates_interfaceMod.F90:: reading fates_taulvis | |
| 208 clmfates_interfaceMod.F90:: reading fates_taulnir | |
| 209 clmfates_interfaceMod.F90:: reading fates_tausvis | |
| 210 clmfates_interfaceMod.F90:: reading fates_tausnir | |
| 211 clmfates_interfaceMod.F90:: reading fates_hydr_avuln_node | |
| 212 clmfates_interfaceMod.F90:: reading fates_hydr_p50_node | |
| 213 clmfates_interfaceMod.F90:: reading fates_hydr_thetas_node | |
| 214 clmfates_interfaceMod.F90:: reading fates_hydr_epsil_node | |
| 215 clmfates_interfaceMod.F90:: reading fates_hydr_pitlp_node | |
| 216 clmfates_interfaceMod.F90:: reading fates_hydr_resid_node | |
| 217 clmfates_interfaceMod.F90:: reading fates_hydr_fcap_node | |
| 218 clmfates_interfaceMod.F90:: reading fates_hydr_pinot_node | |
| 219 clmfates_interfaceMod.F90:: reading fates_hydr_kmax_node | |
| 220 clmfates_interfaceMod.F90:: reading fates_leaf_vcmax25top | |
| 221 NetCDF: Variable not found | |
| 222 NetCDF: Invalid dimension ID or name | |
| 223 NetCDF: Invalid dimension ID or name | |
| 224 NetCDF: Invalid dimension ID or name | |
| 225 NetCDF: Invalid dimension ID or name | |
| 226 NetCDF: Invalid dimension ID or name | |
| 227 NetCDF: Invalid dimension ID or name | |
| 228 NetCDF: Invalid dimension ID or name | |
| 229 NetCDF: Invalid dimension ID or name | |
| 230 NetCDF: Invalid dimension ID or name | |
| 231 NetCDF: Invalid dimension ID or name | |
| 232 NetCDF: Variable not found | |
| 233 NetCDF: Variable not found |