Mercurial > repos > climate > cds_essential_variability

comparison ecv_retrieve.py @ 5:a781bdaaa30e draft default tip

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"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables commit 9a008dba390aef21d4ab61240641bf455f5bb036"
author climate
date Tue, 08 Jun 2021 08:57:38 +0000
parents f47873f1a4b3
children
comparison
equal deleted inserted replaced
4:85ec9e6112df 5:a781bdaaa30e
12 12
13 13
14 class ECV (): 14 class ECV ():
15 def __init__(self, archive, variable, product_type, year, 15 def __init__(self, archive, variable, product_type, year,
16 month, time_aggregation, area, format, output, 16 month, time_aggregation, area, format, output,
17 verbose=False 17 climate_reference_period=None, verbose=False
18 ): 18 ):
19 self.archive = archive 19 self.archive = archive
20 self.variable = variable.split(',') 20 self.variable = variable.split(',')
21 self.climate_reference_period = climate_reference_period
21 if product_type == '': 22 if product_type == '':
22 self.product_type = 'climatology' 23 self.product_type = 'climatology'
23 else: 24 else:
24 self.product_type = product_type 25 self.product_type = product_type
25 if year == '': 26 if year != '' and year is not None:
26 self.year = '2019' 27 self.year = year.split(',')
27 else: 28 else:
28 self.year = year.split(',') 29 self.year = None
29 if month == '': 30 if month == '' or month is None:
30 self.month = '01' 31 self.month = '01'
31 else: 32 else:
32 self.month = month.split(',') 33 self.month = month.split(',')
33 if time_aggregation == '': 34 if time_aggregation == '':
34 self.time_aggregation = '1_month' 35 self.time_aggregation = '1_month_mean'
35 else: 36 else:
36 self.time_aggregation = time_aggregation 37 self.time_aggregation = time_aggregation
37 if area == '': 38 if area == '' or area is None:
38 self.area = 'global' 39 self.area = 'global'
39 else: 40 else:
40 self.area = area 41 self.area = area
41 42
42 if format == '': 43 if format == '':
45 self.format = format 46 self.format = format
46 if output == '': 47 if output == '':
47 self.outputfile = "donwload." + self.format 48 self.outputfile = "donwload." + self.format
48 else: 49 else:
49 self.outputfile = output 50 self.outputfile = output
51 self.verbose = verbose
50 if verbose: 52 if verbose:
51 print("archive: ", self.archive) 53 print("archive: ", self.archive)
52 print("variable: ", self.variable) 54 print("variable: ", self.variable)
53 print("year: ", self.year) 55 print("year: ", self.year)
54 print("month: ", self.month) 56 print("month: ", self.month)
55 self.cdsapi = cdsapi.Client() 57 self.cdsapi = cdsapi.Client()
56 58
57 def retrieve(self): 59 def retrieve(self):
58 60
59 self.cdsapi.retrieve( 61 if self.verbose:
60 self.archive, { 62 print(self.archive)
61 'variable': self.variable, 63 print('variable', self.variable)
62 'year': self.year, 64 print('year', self.year)
63 'month': self.month, 65 print('month', self.month)
64 'origin': 'era5', 66 print('origin', 'era5')
65 'area': self.area, 67 print('area', self.area)
66 'format': self.format, 68 print('format', self.format)
67 'product_type': self.product_type, 69 print('product_type', self.product_type)
68 'time_aggregation': self.time_aggregation, 70 print('time_aggregation', self.time_aggregation)
69 }, 71 print('climate_reference_period',
72 self.climate_reference_period)
73 print(self.outputfile)
74 if self.climate_reference_period is None:
75 self.cdsapi.retrieve(
76 self.archive, {
77 'variable': self.variable,
78 'year': self.year,
79 'month': self.month,
80 'origin': 'era5',
81 'area': self.area,
82 'format': self.format,
83 'product_type': self.product_type,
84 'time_aggregation': self.time_aggregation,
85 },
86 self.outputfile)
87 elif self.year is None:
88 self.cdsapi.retrieve(
89 self.archive, {
90 'variable': self.variable,
91 'climate_reference_period':
92 self.climate_reference_period,
93 'month': self.month,
94 'origin': 'era5',
95 'format': self.format,
96 'product_type': self.product_type,
97 'time_aggregation': self.time_aggregation,
98 },
99 self.outputfile)
100 else:
101 self.cdsapi.retrieve(
102 self.archive, {
103 'variable': self.variable,
104 'climate_reference_period':
105 self.climate_reference_period,
106 'year': self.year,
107 'month': self.month,
108 'origin': 'era5',
109 'format': self.format,
110 'product_type': self.product_type,
111 'time_aggregation': self.time_aggregation,
112 },
70 self.outputfile) 113 self.outputfile)
71 114
72 def checktar(self): 115 def checktar(self):
73 is_grib = False 116 is_grib = False
74 with open(self.outputfile, 'rb') as ofile: 117 with open(self.outputfile, 'rb') as ofile:
90 133
91 remove_apikey = False 134 remove_apikey = False
92 current_pwd = os.environ['HOME'] 135 current_pwd = os.environ['HOME']
93 if 'GALAXY_COPERNICUS_CDSAPIRC_KEY' in os.environ and \ 136 if 'GALAXY_COPERNICUS_CDSAPIRC_KEY' in os.environ and \
94 not os.path.isfile('.cdsapirc'): 137 not os.path.isfile('.cdsapirc'):
138 print('GALAXY_COPERNICUS_CDSAPIRC_KEY ')
95 with open(".cdsapirc", "w+") as apikey: 139 with open(".cdsapirc", "w+") as apikey:
96 apikey.write("url: https://cds.climate.copernicus.eu/api/v2\n") 140 apikey.write("url: https://cds.climate.copernicus.eu/api/v2\n")
97 apikey.write( 141 apikey.write("key: " + os.environ['GALAXY_COPERNICUS_CDSAPIRC_KEY'])
98 "key: " + os.environ['GALAXY_COPERNICUS_CDSAPIRC_KEY'])
99 remove_apikey = True 142 remove_apikey = True
100 143
101 parser.add_argument( 144 parser.add_argument(
102 'archive', 145 'archive',
103 help='Archive name' 146 help='Archive name'
125 parser.add_argument( 168 parser.add_argument(
126 '--area', 169 '--area',
127 help='Desired sub-area to extract (North/West/South/East)' 170 help='Desired sub-area to extract (North/West/South/East)'
128 ) 171 )
129 parser.add_argument( 172 parser.add_argument(
173 '--climate_reference_period',
174 help='Climate reference period (default is 1981-2010)'
175 )
176 parser.add_argument(
130 '--format', 177 '--format',
131 help='Output file format (GRIB or netCDF or tgz)' 178 help='Output file format (GRIB or netCDF or tgz)'
132 ) 179 )
133 parser.add_argument( 180 parser.add_argument(
134 '--output', 181 '--output',
140 action="store_true") 187 action="store_true")
141 args = parser.parse_args() 188 args = parser.parse_args()
142 189
143 p = ECV(args.archive, args.variable, args.product_type, 190 p = ECV(args.archive, args.variable, args.product_type,
144 args.year, args.month, args.time_aggregation, args.area, 191 args.year, args.month, args.time_aggregation, args.area,
145 args.format, args.output, args.verbose) 192 args.format, args.output, args.climate_reference_period, args.verbose)
146 p.retrieve() 193 p.retrieve()
147 p.checktar() 194 p.checktar()
148 # remove api key file if it was created 195 # remove api key file if it was created
149 if remove_apikey and os.getcwd() == current_pwd: 196 if remove_apikey and os.getcwd() == current_pwd:
150 os.remove(os.path.join(current_pwd, '.cdsapirc')) 197 os.remove(os.path.join(current_pwd, '.cdsapirc'))