# HG changeset patch
# User chemteam
# Date 1575209114 0
# Node ID 83d787befb8bd2f53acc2309d0952442db8ee08c
# Parent  c22ee25f40921d4c1518c66147dc55c41ca5b40d
"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tools/gromacs commit 43df863472247b5da304627b6b863c47ab7d02fa"

diff -r c22ee25f4092 -r 83d787befb8b macros.xml
--- a/macros.xml	Wed Nov 20 16:06:27 2019 +0000
+++ b/macros.xml	Sun Dec 01 14:05:14 2019 +0000
@@ -55,9 +55,6 @@
 
         </conditional>
 
-        <param name="capture_log" type="boolean" value="false" label="Generate detailed log" help="Generate detailed log information that can be summarized with ParseLog."/>
-
-
     </xml>
 
     <xml name="log">
diff -r c22ee25f4092 -r 83d787befb8b sim.xml
--- a/sim.xml	Wed Nov 20 16:06:27 2019 +0000
+++ b/sim.xml	Sun Dec 01 14:05:14 2019 +0000
@@ -44,7 +44,7 @@
             -o outp.tpr &>> verbose.txt &&
 
 
-        gmx mdrun -deffnm outp &>> verbose.txt
+        gmx mdrun -nt "\${GALAXY_SLOTS:-4}" -deffnm outp &>> verbose.txt
  
         #if $outps.str == 'pdb' or $outps.str == 'both'
             && gmx editconf -f outp.gro -o outp.pdb &>> verbose.txt