# HG changeset patch
# User blankenberg
# Date 1606271792 0
# Node ID 2a8c426ab5bce83291e66b84ce70d54bf98cc4b2
# Parent  46f45544839fd822f3736959f4cec7ea47265754
Uploaded

diff -r 46f45544839f -r 2a8c426ab5bc plink2.xml
--- a/plink2.xml	Wed Nov 25 01:57:54 2020 +0000
+++ b/plink2.xml	Wed Nov 25 02:36:32 2020 +0000
@@ -3331,8 +3331,8 @@
                               
                               <when value="from_list">
                                   <param name="haps_MOD_1" type="select" label="Select value">
-                        <option value="{ref-first">{ref-first</option>
-<option value="ref-last}">ref-last}</option>
+                        <option value="{ref-first"><![CDATA[{ref-first]]></option>
+<option value="ref-last}"><![CDATA[ref-last}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3391,8 +3391,8 @@
                               
                               <when value="from_list">
                                   <param name="import_dosage_MOD_8" type="select" label="Select value">
-                        <option value="{ref-first">{ref-first</option>
-<option value="ref-last}">ref-last}</option>
+                        <option value="{ref-first"><![CDATA[{ref-first]]></option>
+<option value="ref-last}"><![CDATA[ref-last}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3425,9 +3425,9 @@
                               
                               <when value="from_list">
                                   <param name="dummy_MOD_4" type="select" label="Select value">
-                        <option value="{acgt">{acgt</option>
-<option value="1234">1234</option>
-<option value="12}">12}</option>
+                        <option value="{acgt"><![CDATA[{acgt]]></option>
+<option value="1234"><![CDATA[1234]]></option>
+<option value="12}"><![CDATA[12}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3567,8 +3567,8 @@
                               
                               <when value="from_list">
                                   <param name="export_MOD_1" type="select" label="Select value">
-                        <option value="{01">{01</option>
-<option value="12}">12}</option>
+                        <option value="{01"><![CDATA[{01]]></option>
+<option value="12}"><![CDATA[12}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3645,8 +3645,8 @@
                               
                               <when value="from_list">
                                   <param name="missing_MOD_1" type="select" label="Select value">
-                        <option value="{sample-only">{sample-only</option>
-<option value="variant-only}">variant-only}</option>
+                        <option value="{sample-only"><![CDATA[{sample-only]]></option>
+<option value="variant-only}"><![CDATA[variant-only}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3727,8 +3727,8 @@
                               
                               <when value="from_list">
                                   <param name="sample_diff_MOD_1" type="select" label="Select value">
-                        <option value="'dosage'">'dosage'</option>
-<option value="'dosage='&lt;tolerance&gt;">'dosage='<tolerance></option>
+                        <option value="'dosage'"><![CDATA['dosage']]></option>
+<option value="'dosage='&lt;tolerance&gt;"><![CDATA['dosage='<tolerance>]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3744,8 +3744,8 @@
                               
                               <when value="from_list">
                                   <param name="sample_diff_MOD_3" type="select" label="Select value">
-                        <option value="{pairwise">{pairwise</option>
-<option value="counts-only}">counts-only}</option>
+                        <option value="{pairwise"><![CDATA[{pairwise]]></option>
+<option value="counts-only}"><![CDATA[counts-only}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3764,8 +3764,8 @@
                               
                               <when value="from_list">
                                   <param name="sample_diff_MOD_8" type="select" label="Select value">
-                        <option value="base=">base=</option>
-<option value="ids=">ids=</option>
+                        <option value="base="><![CDATA[base=]]></option>
+<option value="ids="><![CDATA[ids=]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3797,8 +3797,8 @@
                               
                               <when value="from_list">
                                   <param name="sample_diff_MOD_1" type="select" label="Select value">
-                        <option value="'dosage'">'dosage'</option>
-<option value="'dosage='&lt;tolerance&gt;">'dosage='<tolerance></option>
+                        <option value="'dosage'"><![CDATA['dosage']]></option>
+<option value="'dosage='&lt;tolerance&gt;"><![CDATA['dosage='<tolerance>]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3814,8 +3814,8 @@
                               
                               <when value="from_list">
                                   <param name="sample_diff_MOD_3" type="select" label="Select value">
-                        <option value="{pairwise">{pairwise</option>
-<option value="counts-only}">counts-only}</option>
+                        <option value="{pairwise"><![CDATA[{pairwise]]></option>
+<option value="counts-only}"><![CDATA[counts-only}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3848,9 +3848,9 @@
                               
                               <when value="from_list">
                                   <param name="make_king_MOD_0" type="select" label="Select value">
-                        <option value="{square">{square</option>
-<option value="square0">square0</option>
-<option value="triangle}">triangle}</option>
+                        <option value="{square"><![CDATA[{square]]></option>
+<option value="square0"><![CDATA[square0]]></option>
+<option value="triangle}"><![CDATA[triangle}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3865,9 +3865,9 @@
                               
                               <when value="from_list">
                                   <param name="make_king_MOD_1" type="select" label="Select value">
-                        <option value="{zs">{zs</option>
-<option value="bin">bin</option>
-<option value="bin4}">bin4}</option>
+                        <option value="{zs"><![CDATA[{zs]]></option>
+<option value="bin"><![CDATA[bin]]></option>
+<option value="bin4}"><![CDATA[bin4}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3910,9 +3910,9 @@
                               
                               <when value="from_list">
                                   <param name="make_rel_MOD_2" type="select" label="Select value">
-                        <option value="{square">{square</option>
-<option value="square0">square0</option>
-<option value="triangle}">triangle}</option>
+                        <option value="{square"><![CDATA[{square]]></option>
+<option value="square0"><![CDATA[square0]]></option>
+<option value="triangle}"><![CDATA[triangle}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3927,9 +3927,9 @@
                               
                               <when value="from_list">
                                   <param name="make_rel_MOD_3" type="select" label="Select value">
-                        <option value="{zs">{zs</option>
-<option value="bin">bin</option>
-<option value="bin4}">bin4}</option>
+                        <option value="{zs"><![CDATA[{zs]]></option>
+<option value="bin"><![CDATA[bin]]></option>
+<option value="bin4}"><![CDATA[bin4}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3958,8 +3958,8 @@
                               
                               <when value="from_list">
                                   <param name="make_grm_list_MOD_3" type="select" label="Select value">
-                        <option value="{id-header">{id-header</option>
-<option value="iid-only}">iid-only}</option>
+                        <option value="{id-header"><![CDATA[{id-header]]></option>
+<option value="iid-only}"><![CDATA[iid-only}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -3987,8 +3987,8 @@
                               
                               <when value="from_list">
                                   <param name="make_grm_bin_MOD_2" type="select" label="Select value">
-                        <option value="{id-header">{id-header</option>
-<option value="iid-only}">iid-only}</option>
+                        <option value="{id-header"><![CDATA[{id-header]]></option>
+<option value="iid-only}"><![CDATA[iid-only}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4022,8 +4022,8 @@
                               
                               <when value="from_list">
                                   <param name="pca_MOD_1" type="select" label="Select value">
-                        <option value="{approx">{approx</option>
-<option value="meanimpute}">meanimpute}</option>
+                        <option value="{approx"><![CDATA[{approx]]></option>
+<option value="meanimpute}"><![CDATA[meanimpute}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4053,8 +4053,8 @@
                               
                               <when value="from_list">
                                   <param name="pca_MOD_0" type="select" label="Select value">
-                        <option value="{biallelic-var-wts">{biallelic-var-wts</option>
-<option value="var-wts}">var-wts}</option>
+                        <option value="{biallelic-var-wts"><![CDATA[{biallelic-var-wts]]></option>
+<option value="var-wts}"><![CDATA[var-wts}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4070,8 +4070,8 @@
                               
                               <when value="from_list">
                                   <param name="pca_MOD_2" type="select" label="Select value">
-                        <option value="{approx">{approx</option>
-<option value="meanimpute}">meanimpute}</option>
+                        <option value="{approx"><![CDATA[{approx]]></option>
+<option value="meanimpute}"><![CDATA[meanimpute}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4140,8 +4140,8 @@
                               
                               <when value="from_list">
                                   <param name="glm_MOD_2" type="select" label="Select value">
-                        <option value="{sex">{sex</option>
-<option value="no-x-sex}">no-x-sex}</option>
+                        <option value="{sex"><![CDATA[{sex]]></option>
+<option value="no-x-sex}"><![CDATA[no-x-sex}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4173,8 +4173,8 @@
                               
                               <when value="from_list">
                                   <param name="score_MOD_4" type="select" label="Select value">
-                        <option value="{header">{header</option>
-<option value="header-read}">header-read}</option>
+                        <option value="{header"><![CDATA[{header]]></option>
+<option value="header-read}"><![CDATA[header-read}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4189,10 +4189,10 @@
                               
                               <when value="from_list">
                                   <param name="score_MOD_5" type="select" label="Select value">
-                        <option value="{center">{center</option>
-<option value="variance-standardize">variance-standardize</option>
-<option value="dominant">dominant</option>
-<option value="recessive}">recessive}</option>
+                        <option value="{center"><![CDATA[{center]]></option>
+<option value="variance-standardize"><![CDATA[variance-standardize]]></option>
+<option value="dominant"><![CDATA[dominant]]></option>
+<option value="recessive}"><![CDATA[recessive}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4211,8 +4211,8 @@
                               
                               <when value="from_list">
                                   <param name="score_MOD_10" type="select" label="Select value">
-                        <option value="{list-variants">{list-variants</option>
-<option value="list-variants-zs}">list-variants-zs}</option>
+                        <option value="{list-variants"><![CDATA[{list-variants]]></option>
+<option value="list-variants-zs}"><![CDATA[list-variants-zs}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -4241,8 +4241,8 @@
                               
                               <when value="from_list">
                                   <param name="variant_score_MOD_2" type="select" label="Select value">
-                        <option value="'bin'">'bin'</option>
-<option value="'cols='&lt;col set descriptor&gt;">'cols='<col set descriptor></option>
+                        <option value="'bin'"><![CDATA['bin']]></option>
+<option value="'cols='&lt;col set descriptor&gt;"><![CDATA['cols='<col set descriptor>]]></option>
 </param>
                         </when>
                       </conditional>
@@ -5021,8 +5021,8 @@
                               
                               <when value="from_list">
                                   <param name="extract_MOD_0" type="select" label="Select value">
-                        <option value="{bed0">{bed0</option>
-<option value="bed1}">bed1}</option>
+                        <option value="{bed0"><![CDATA[{bed0]]></option>
+<option value="bed1}"><![CDATA[bed1}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -5049,8 +5049,8 @@
                               
                               <when value="from_list">
                                   <param name="exclude_MOD_0" type="select" label="Select value">
-                        <option value="{bed0">{bed0</option>
-<option value="bed1}">bed1}</option>
+                        <option value="{bed0"><![CDATA[{bed0]]></option>
+<option value="bed1}"><![CDATA[bed1}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -5077,8 +5077,8 @@
                               
                               <when value="from_list">
                                   <param name="extract_intersect_MOD_0" type="select" label="Select value">
-                        <option value="{bed0">{bed0</option>
-<option value="bed1}">bed1}</option>
+                        <option value="{bed0"><![CDATA[{bed0]]></option>
+<option value="bed1}"><![CDATA[bed1}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -5177,8 +5177,8 @@
                               
                               <when value="from_list">
                                   <param name="split_cat_pheno_MOD_0" type="select" label="Select value">
-                        <option value="{omit-most">{omit-most</option>
-<option value="omit-last}">omit-last}</option>
+                        <option value="{omit-most"><![CDATA[{omit-most]]></option>
+<option value="omit-last}"><![CDATA[omit-last}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -5613,8 +5613,8 @@
                               
                               <when value="from_list">
                                   <param name="geno_MOD_1" type="select" label="Select value">
-                        <option value="{dosage">{dosage</option>
-<option value="hh-missing}">hh-missing}</option>
+                        <option value="{dosage"><![CDATA[{dosage]]></option>
+<option value="hh-missing}"><![CDATA[hh-missing}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -5641,8 +5641,8 @@
                               
                               <when value="from_list">
                                   <param name="mind_MOD_1" type="select" label="Select value">
-                        <option value="{dosage">{dosage</option>
-<option value="hh-missing}">hh-missing}</option>
+                        <option value="{dosage"><![CDATA[{dosage]]></option>
+<option value="hh-missing}"><![CDATA[hh-missing}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -6162,9 +6162,9 @@
                               
                               <when value="from_list">
                                   <param name="new_id_max_allele_len_MOD_1" type="select" label="Select value">
-                        <option value="{error">{error</option>
-<option value="missing">missing</option>
-<option value="truncate}">truncate}</option>
+                        <option value="{error"><![CDATA[{error]]></option>
+<option value="missing"><![CDATA[missing]]></option>
+<option value="truncate}"><![CDATA[truncate}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -6234,8 +6234,8 @@
                               
                               <when value="from_list">
                                   <param name="recover_var_ids_MOD_2" type="select" label="Select value">
-                        <option value="{rigid">{rigid</option>
-<option value="force}">force}</option>
+                        <option value="{rigid"><![CDATA[{rigid]]></option>
+<option value="force}"><![CDATA[force}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -6430,8 +6430,8 @@
                               
                               <when value="from_list">
                                   <param name="condition_MOD_1" type="select" label="Select value">
-                        <option value="{dominant">{dominant</option>
-<option value="recessive}">recessive}</option>
+                        <option value="{dominant"><![CDATA[{dominant]]></option>
+<option value="recessive}"><![CDATA[recessive}]]></option>
 </param>
                         </when>
                       </conditional>
@@ -6459,8 +6459,8 @@
                               
                               <when value="from_list">
                                   <param name="condition_list_MOD_1" type="select" label="Select value">
-                        <option value="{dominant">{dominant</option>
-<option value="recessive}">recessive}</option>
+                        <option value="{dominant"><![CDATA[{dominant]]></option>
+<option value="recessive}"><![CDATA[recessive}]]></option>
 </param>
                         </when>
                       </conditional>