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view tool_dependencies.xml @ 1:03f1db7f814d

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Add tool_dependencies.xml.
author Daniel Blankenberg <dan@bx.psu.edu>
date Tue, 14 May 2013 10:10:59 -0400
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children 3b4a96996e8f
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<?xml version="1.0"?>
<tool_dependency>
    <package name="pyBamTools" version="0.0.1">
        <install version="1.0">
            <actions>
                <action type="shell_command">hg clone -r 882432f4c0c1b2b3522aa9b69f3aa68b28e1f0c0 https://bitbucket.org/dan/pybamtools</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR</action> 
                <action type="set_environment">
                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Installs pyBamTools libraries.
        </readme>
    </package>
</tool_dependency>