Mercurial > repos > blankenberg > package_pybamparser_0_0_1

changeset 0:25dda1db045d draft

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planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamparser_0_0_1 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
author blankenberg
date Thu, 17 Sep 2015 11:07:29 -0400
parents
children f0447bf3223c
files tool_dependencies.xml
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Sep 17 11:07:29 2015 -0400
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="pyBamParser" version="0.0.1">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">hg clone -r e0d3642d2648336913038393ca6d92dac5efe284 https://bitbucket.org/dan/pybamparser pyBamParser</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR</action> 
+                <action type="set_environment">
+                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Installs pyBamParser libraries.
+        </readme>
+    </package>
+</tool_dependency>