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comparison README.rst @ 16:b3fe23fb6ad2

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update readme
author Daniel Blankenberg <dan@bx.psu.edu>
date Tue, 27 Aug 2013 14:05:18 -0400
parents 7f1950c9012a
children f7360b70729d
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63 When set, nucleotide counts (NC) will be reported in reference to the aligned read's source strand. Reported as: <strand><BASE>=<COUNT>. 63 When set, nucleotide counts (NC) will be reported in reference to the aligned read's source strand. Reported as: <strand><BASE>=<COUNT>.
64 64
65 Choose the dtype to use for storing coverage information: 65 Choose the dtype to use for storing coverage information:
66 66
67 This controls the maximum depth value for each nucleotide/position/strand (when specified). Smaller values require the least amount of memory, but have smaller maximal limits. 67 This controls the maximum depth value for each nucleotide/position/strand (when specified). Smaller values require the least amount of memory, but have smaller maximal limits.
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69 68
70 +--------+----------------------------+ 69 +--------+----------------------------+
71 | name | maximum coverage value | 70 | name | maximum coverage value |
72 +========+============================+ 71 +========+============================+
73 | uint8 | 255 | 72 | uint8 | 255 |