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comparison tools/naive_variant_detector.xml @ 4:1c23da12b768

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Remove test-data/ path from defined Tool tests.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 15 May 2013 09:37:01 -0400
parents 55b4460cd0ce
children 4a67169be0ee
comparison
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3:b59e4da0cb70 4:1c23da12b768
127 127
128 </help> 128 </help>
129 <tests> 129 <tests>
130 <test> 130 <test>
131 <param name="reference_source_selector" value="history" /> 131 <param name="reference_source_selector" value="history" />
132 <param name="input_bam" value="test-data/fake_phiX174_reads_1.bam" ftype="bam" /> 132 <param name="input_bam" value="fake_phiX174_reads_1.bam" ftype="bam" />
133 <param name="ref_file" value="test-data/phiX174.fasta" ftype="fasta" /> 133 <param name="ref_file" value="phiX174.fasta" ftype="fasta" />
134 <param name="min_support_depth" value="0" /> 134 <param name="min_support_depth" value="0" />
135 <param name="min_base_quality" value="" /> 135 <param name="min_base_quality" value="" />
136 <param name="min_mapping_quality" value="" /> 136 <param name="min_mapping_quality" value="" />
137 <param name="ploidy" value="2" /> 137 <param name="ploidy" value="2" />
138 <param name="variants_only" value="False" /> 138 <param name="variants_only" value="False" />
139 <param name="use_strand" value="False" /> 139 <param name="use_strand" value="False" />
140 <param name="coverage_dtype" value="uint8" /> 140 <param name="coverage_dtype" value="uint8" />
141 <output name="output_vcf" file="test-data/fake_phiX174_reads_1_test_out_1.vcf" compare="contains" /> 141 <output name="output_vcf" file="fake_phiX174_reads_1_test_out_1.vcf" compare="contains" />
142 </test> 142 </test>
143 </tests> 143 </tests>
144 144
145 </tool> 145 </tool>