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update readme
author Daniel Blankenberg <dan@bx.psu.edu>
date Tue, 27 Aug 2013 13:59:06 -0400
parents 162baa0e4db4
children 7f1950c9012a
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1 This repository contains the Naive Variant Caller. 1 This repository contains the **Naive Variant Caller** tool.
2 2
3 ------ 3 ------
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5 **What it does** 5 **What it does**
6 6
63 When set, nucleotide counts (NC) will be reported in reference to the aligned read's source strand. Reported as: <strand><BASE>=<COUNT>. 63 When set, nucleotide counts (NC) will be reported in reference to the aligned read's source strand. Reported as: <strand><BASE>=<COUNT>.
64 64
65 Choose the dtype to use for storing coverage information: 65 Choose the dtype to use for storing coverage information:
66 66
67 This controls the maximum depth value for each nucleotide/position/strand (when specified). Smaller values require the least amount of memory, but have smaller maximal limits. 67 This controls the maximum depth value for each nucleotide/position/strand (when specified). Smaller values require the least amount of memory, but have smaller maximal limits.
68 68
69 +--------+----------------------------+ 69 +--------+----------------------------+
70 | name | maximum coverage value | 70 | name | maximum coverage value |
71 +========+============================+ 71 +========+============================+
72 | uint8 | 255 | 72 | uint8 | 255 |
73 +--------+----------------------------+ 73 +--------+----------------------------+