Mercurial > repos > blankenberg > macs2

annotate test-data/predictd_on_ChIP_200K_and_Control_200K.txt @ 1:1f6f83b03ce2

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
update to include changeset_revision
author Daniel Blankenberg <dan@bx.psu.edu>
date Tue, 29 Apr 2014 14:28:52 -0400
parents a700427c00ae
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
1 # read alignment files...
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
2 # read treatment tags...
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
3 Detected format is
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
4 Detected format is
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
5 tag size is determined as 86 bps
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
6 # tag size = 86
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
7 # total tags in alignment file
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
8 # Build Peak Model...
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
9 #2 number of paired peaks
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
10 start model_add_line...
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
11 start X-correlation...
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
12 end of X-cor
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
13 # finished!
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
14 # predicted fragment length is 284 bps
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
15 # alternative fragment length(s) may be -246,-230,284 bps
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
16 # Generate R script for model